Os10g0491100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os10g0491100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.18 | 0.319 | 9.57 | -0.658 | 0.866 | -1.19 | 1.08 | -0.988 | 0.326 | 1.69 | 19.3 | 5770 | -- | -- |
| 47.19 | 0.32 | 9.61 | -0.694 | 0.87 | -0.924 | 1.17 | -- | 0.322 | 1.63 | 19.1 | 5724 | -- | -- |
| 50.21 | 0.33 | 9.57 | -0.712 | 0.882 | -1.39 | -- | -1.33 | 0.318 | 1.8 | 19 | 5928 | -- | -- |
| 51.68 | 0.335 | 9.62 | -0.782 | 0.882 | -0.959 | -- | -- | 0.3 | 1.83 | 19.2 | 5934 | -- | -- |
| 95.02 | 0.454 | 9.56 | -0.68 | -- | -1.32 | -- | -1.15 | 0.348 | -- | 19.1 | 5397 | -- | -- |
| 60.72 | 0.365 | 9.55 | -0.114 | 0.881 | -- | 1.12 | -- | 0.554 | 1.71 | -- | -- | -- | -- |
| 65.57 | 0.379 | 9.56 | -0.15 | 0.884 | -- | -- | -- | 0.547 | 1.85 | -- | -- | -- | -- |
| 93.59 | 0.451 | 9.61 | -0.522 | -- | -0.782 | -- | -- | 0.307 | -- | 21.7 | 2444 | -- | -- |
| 58.81 | 0.359 | 9.57 | -- | 0.971 | -0.482 | -- | -- | 0.512 | 1.74 | 19.2 | 5934 | -- | -- |
| 112.92 | 0.497 | 9.55 | -0.114 | -- | -- | -- | -- | 0.568 | -- | -- | -- | -- | -- |
| 66.17 | 0.381 | 9.55 | -- | 0.882 | -- | -- | -- | 0.564 | 1.85 | -- | -- | -- | -- |
| 89.57 | 0.441 | 9.6 | -- | -- | -0.769 | -- | -- | 0.327 | -- | 24.89 | 1034 | -- | -- |
| 113.27 | 0.497 | 9.54 | -- | -- | -- | -- | -- | 0.58 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.18 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 2 | 41.19 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 10 | 41.53 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 16 | 41.62 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 19 | 41.67 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 23 | 41.73 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 37 | 41.84 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 48 | 41.94 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 60 | 42.03 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 74 | 42.09 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 89 | 42.16 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 90 | 42.16 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 123 | 42.27 | wind | 3.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 136 | 42.30 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 139 | 42.32 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 160 | 42.38 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 209 | 42.47 | wind | 3.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 219 | 42.49 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 287 | 42.63 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 361 | 42.79 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 378 | 42.83 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 492 | 43.11 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 539 | 43.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 558 | 43.27 | wind | 1.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 674 | 43.64 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 733 | 43.81 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 762 | 43.88 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 777 | 43.96 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 820 | 44.11 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 835 | 44.16 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 885 | 44.30 | temperature | 25.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 908 | 44.39 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 917 | 44.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 918 | 44.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 919 | 44.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 920 | 44.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 940 | 44.47 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 15 |
| 970 | 44.55 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 974 | 44.55 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 985 | 44.59 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 993 | 44.60 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |