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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0489900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.88 (0.0341) R2 : 0.526
β1 : -1.8 (0.126) R2dD : 0.225 R2D : 0.107
β2 : 0.888 (0.0938) R2dC : 0.105 R2C : 0.178
β3 : 1.62 (0.136) R2dE : 0.177 R2E : 0.144
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.566 (0.0748) R2dN8 : 0.0849 R2N8 : -0.0195
σ : 0.635
deviance : 185.9
__
_____
C
peak time of C : 18.5
E
wheather : temperature
threshold : 23.47
memory length : 19
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.62 0.624 4.83 -1.27 0.974 1.35 0.429 3.32 -0.434 18.4 21.6 8 -- --
185.32 0.634 4.88 -1.77 0.909 1.6 0.561 -- -0.573 18.5 22.97 11 -- --
177.06 0.62 4.83 -1.26 0.975 1.34 -- 3.42 -0.428 18.3 21.6 7 -- --
185.9 0.635 4.88 -1.8 0.888 1.62 -- -- -0.566 18.5 23.47 19 -- --
205.25 0.667 4.82 -1.48 -- 1.89 -- 2.91 -0.5 -- 22.96 196 -- --
222.17 0.699 4.84 -1.5 1.36 -- 1.33 -- -0.345 16.9 -- -- -- --
226.69 0.705 4.83 -1.5 1.37 -- -- -- -0.338 17 -- -- -- --
207.38 0.671 4.87 -1.9 -- 2.08 -- -- -0.61 -- 23.6 198 -- --
264.28 0.761 4.82 -- 1.04 1.16 -- -- -0.256 17.9 24.8 19 -- --
325.85 0.843 4.82 -1.55 -- -- -- -- -0.374 -- -- -- -- --
286.04 0.791 4.8 -- 1.4 -- -- -- -0.171 17 -- -- -- --
298.93 0.805 4.81 -- -- 1.8 -- -- -0.333 -- 24.4 192 -- --
389.26 0.921 4.78 -- -- -- -- -- -0.202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.42 temperature 10 270 > th dose dependent rect. 16 23
4 173.94 temperature 30 90 < th dose dependent rect. 23 23
5 174.07 temperature 30 270 < th dose dependent rect. 23 21
15 176.04 temperature 20 10 > th dose dependent rect. 21 23
18 176.41 temperature 20 10 > th dose dependent rect. 8 23
19 176.45 temperature 20 10 > th dose dependent rect. 3 23
27 176.95 temperature 15 270 > th dose dependent rect. 8 15
39 177.37 temperature 10 270 > th dose dependent rect. 2 23
43 177.60 temperature 20 10 > th dose dependent rect. 1 23
46 177.79 temperature 20 10 > th dose dependent no NA NA
52 177.99 temperature 20 10 > th dose dependent rect. 3 21
58 178.22 temperature 20 10 > th dose dependent rect. 17 23
75 178.55 temperature 30 270 < th dose dependent rect. 11 23
85 178.80 temperature 10 10 > th dose dependent no NA NA
96 179.15 temperature 10 90 > th dose dependent no NA NA
109 179.34 temperature 20 270 > th dose dependent sin 4 NA
115 179.62 temperature 20 720 > th dose dependent rect. 21 17
116 179.64 temperature 20 10 > th dose dependent sin 0 NA
121 179.77 temperature 20 10 > th dose dependent rect. 11 23
133 179.96 temperature 20 90 > th dose dependent sin 1 NA
139 180.07 temperature 30 270 < th dose dependent rect. 9 23
159 180.40 temperature 10 720 > th dose dependent rect. 19 20
160 180.41 temperature 20 10 > th dose dependent rect. 8 16
169 180.52 wind 9 43200 > th dose dependent rect. 18 12
173 180.57 temperature 30 270 < th dose dependent no NA NA
176 180.58 temperature 20 720 > th dose dependent rect. 24 14
223 181.16 temperature 30 10 < th dose dependent rect. 24 22
286 181.61 temperature 20 10 > th dose dependent rect. 8 18
304 181.72 wind 9 43200 > th dose independent rect. 18 13
327 181.91 temperature 30 1440 < th dose dependent rect. 17 5
339 182.01 temperature 30 1440 < th dose dependent rect. 18 3
381 182.23 temperature 20 10 > th dose dependent rect. 15 23
388 182.27 temperature 30 10 < th dose dependent sin 22 NA
397 182.32 temperature 30 30 < th dose dependent rect. 9 23
399 182.34 temperature 30 30 < th dose dependent rect. 7 23
420 182.49 temperature 10 1440 > th dose dependent rect. 18 3
437 182.57 temperature 30 10 < th dose dependent rect. 13 23
469 182.75 temperature 30 10 < th dose dependent rect. 15 23
490 182.84 temperature 30 10 < th dose dependent no NA NA
501 182.88 temperature 30 270 < th dose dependent rect. 17 23
543 183.05 temperature 30 270 < th dose dependent rect. 15 23
569 183.16 wind 9 43200 < th dose independent rect. 18 11
579 183.21 wind 9 43200 < th dose independent rect. 18 13
600 183.33 temperature 20 1440 > th dose dependent rect. 17 8
611 183.38 temperature 30 1440 < th dose dependent rect. 17 9
625 183.48 temperature 10 1440 > th dose dependent rect. 17 9
644 183.55 temperature 30 30 < th dose dependent rect. 17 23
725 183.83 temperature 30 270 < th dose dependent rect. 3 23
732 183.87 temperature 30 720 < th dose dependent rect. 4 19
817 184.10 radiation 1 43200 < th dose dependent rect. 22 3
891 184.38 temperature 20 1440 > th dose dependent sin 13 NA
991 184.66 temperature 10 1440 > th dose dependent sin 15 NA