Os10g0489100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os10g0489100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.11 | 0.253 | 10.2 | -1.08 | 0.332 | 0.00923 | -0.903 | -5.27 | 0.0472 | 19.2 | 30.1 | 1815 | -- | -- |
| 30.81 | 0.259 | 10.1 | -0.272 | 0.302 | -0.484 | -1.06 | -- | 0.0712 | 18.9 | 31.4 | 2684 | -- | -- |
| 31.11 | 0.26 | 10.2 | -1.04 | 0.341 | -0.0149 | -- | -5.29 | 0.046 | 19.5 | 30.01 | 1895 | -- | -- |
| 32.79 | 0.267 | 10.1 | -0.249 | 0.349 | -0.65 | -- | -- | 0.0643 | 19.5 | 31 | 1963 | -- | -- |
| 36.64 | 0.282 | 10.2 | -1.12 | -- | 0.0666 | -- | -4.94 | 0.0401 | -- | 29.83 | 3150 | -- | -- |
| 41.18 | 0.301 | 10.1 | -0.396 | 0.305 | -- | -1.01 | -- | 0.167 | 19 | -- | -- | -- | -- |
| 43.83 | 0.31 | 10.1 | -0.378 | 0.303 | -- | -- | -- | 0.164 | 19.3 | -- | -- | -- | -- |
| 38.55 | 0.289 | 10.1 | -0.254 | -- | -0.557 | -- | -- | 0.0653 | -- | 31.22 | 1627 | -- | -- |
| 34.27 | 0.273 | 10.1 | -- | 0.361 | -0.684 | -- | -- | 0.0871 | 19.5 | 31.05 | 1963 | -- | -- |
| 48.69 | 0.326 | 10.1 | -0.383 | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
| 47.59 | 0.323 | 10.1 | -- | 0.306 | -- | -- | -- | 0.206 | 19.2 | -- | -- | -- | -- |
| 39.76 | 0.294 | 10.1 | -- | -- | -0.605 | -- | -- | 0.0834 | -- | 31.43 | 3148 | -- | -- |
| 52.56 | 0.338 | 10.1 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.51 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 29.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 13 | 29.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 29.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 22 | 29.70 | temperature | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 29 | 29.72 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 43 | 29.73 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 46 | 29.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 50 | 29.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 54 | 29.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 75 | 29.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 86 | 29.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 88 | 29.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 132 | 29.91 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 167 | 29.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 168 | 29.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 175 | 29.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 330 | 30.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 405 | 30.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 458 | 30.27 | temperature | 25 | 1440 | > th | dose dependent | sin | 8 | NA |
| 460 | 30.28 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 625 | 30.32 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 23 |
| 655 | 30.34 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 721 | 30.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 736 | 30.38 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 737 | 30.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 743 | 30.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 16 |
| 765 | 30.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 826 | 30.39 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 830 | 30.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 897 | 30.46 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 1 |