Os10g0488900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os10g0488900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.86 | 0.605 | 6.22 | 1.02 | 0.203 | -1.25 | -0.966 | 0.508 | -0.618 | 22.2 | 29.1 | 327 | -- | -- |
| 165.73 | 0.6 | 6.21 | 1.08 | 0.206 | -1.2 | -0.963 | -- | -0.608 | 22.1 | 29.06 | 324 | -- | -- |
| 169.16 | 0.606 | 6.22 | 1.08 | 0.227 | -1.16 | -- | 0.363 | -0.616 | 21.1 | 29.04 | 321 | -- | -- |
| 169.12 | 0.606 | 6.21 | 1.13 | 0.248 | -1.12 | -- | -- | -0.598 | 21 | 29.05 | 304 | -- | -- |
| 171.72 | 0.61 | 6.21 | 1.08 | -- | -1.24 | -- | 0.343 | -0.617 | -- | 29.01 | 348 | -- | -- |
| 203.81 | 0.669 | 6.2 | 1.33 | 0.743 | -- | 0.318 | -- | -0.508 | 17.8 | -- | -- | -- | -- |
| 204.02 | 0.669 | 6.2 | 1.32 | 0.746 | -- | -- | -- | -0.507 | 18 | -- | -- | -- | -- |
| 171.8 | 0.61 | 6.21 | 1.12 | -- | -1.22 | -- | -- | -0.606 | -- | 29 | 346 | -- | -- |
| 202.13 | 0.662 | 6.26 | -- | 0.245 | -1.3 | -- | -- | -0.748 | 22.4 | 29.1 | 304 | -- | -- |
| 232.83 | 0.713 | 6.19 | 1.3 | -- | -- | -- | -- | -0.524 | -- | -- | -- | -- | -- |
| 250.23 | 0.74 | 6.23 | -- | 0.726 | -- | -- | -- | -0.654 | 18.1 | -- | -- | -- | -- |
| 204.37 | 0.666 | 6.24 | -- | -- | -1.33 | -- | -- | -0.736 | -- | 29.1 | 351 | -- | -- |
| 277.56 | 0.778 | 6.22 | -- | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 15 | 157.10 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 30 | 159.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 10 | 8 |
| 32 | 159.15 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 47 | 159.94 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 66 | 160.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 17 |
| 71 | 161.37 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 86 | 162.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 13 |
| 114 | 162.97 | temperature | 15.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 125 | 163.37 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 19 |
| 136 | 163.85 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 182 | 165.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 193 | 165.25 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 202 | 165.31 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 222 | 165.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 258 | 166.11 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 279 | 166.37 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 8 |
| 285 | 166.45 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 8 |
| 299 | 166.70 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 307 | 166.84 | wind | 1.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 356 | 167.34 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 12 | 8 |
| 357 | 167.34 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 365 | 167.42 | wind | 1.0 | 10 | > th | dose independent | rect. | 12 | 8 |
| 377 | 167.58 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 406 | 167.77 | temperature | 10.0 | 10 | > th | dose independent | rect. | 12 | 8 |
| 411 | 167.78 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 426 | 167.98 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 429 | 167.98 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 432 | 167.98 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 434 | 167.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 435 | 168.00 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 438 | 168.04 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 16 |
| 439 | 168.04 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 16 |
| 447 | 168.10 | wind | 1.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 465 | 168.26 | wind | 1.0 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 551 | 169.01 | temperature | 15.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 555 | 169.05 | wind | 7.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 556 | 169.05 | humidity | 90.0 | 10 | < th | dose independent | rect. | 12 | 8 |
| 558 | 169.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 560 | 169.07 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 586 | 169.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 623 | 169.55 | wind | 3.0 | 10 | > th | dose independent | rect. | 7 | 5 |
| 626 | 169.56 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 637 | 169.64 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 649 | 169.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 675 | 169.88 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 686 | 169.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 18 |
| 687 | 169.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 728 | 170.27 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 751 | 170.40 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 16 |
| 755 | 170.43 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 771 | 170.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 773 | 170.50 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 775 | 170.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 785 | 170.55 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 809 | 170.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 6 |
| 811 | 170.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 816 | 170.70 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 892 | 171.03 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 920 | 171.13 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 921 | 171.13 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 925 | 171.15 | radiation | 1.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 947 | 171.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 6 |
| 948 | 171.23 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 8 |
| 971 | 171.30 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 978 | 171.35 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 990 | 171.39 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 19 |