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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0488400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.46 (0.0688) R2 : 0.826
β1 : 2.9 (0.253) R2dD : 0.0528 R2D : -0.00503
β2 : 4.76 (0.326) R2dC : 0.324 R2C : -0.969
β3 : -9.24 (0.284) R2dE : 1.62 R2E : 0.35
β4 : -3.82 (0.623) R2dD*C : 0.0149 R2D*C : -0.0264
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.21 (0.147) R2dN8 : 0.115 R2N8 : 0.068
σ : 1.28
deviance : 760.11
__
_____
C
peak time of C : 12.5
E
wheather : precipitation
threshold : 0.4885
memory length : 297
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.68
open length of G : 8.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
761.4 1.3 7.46 2.9 4.64 -9.12 -3.61 -0.274 2.21 12.6 0.3068 293 3.68 8.95
760.11 1.28 7.46 2.9 4.76 -9.24 -3.82 -- 2.21 12.5 0.4885 297 3.68 8.92
770.16 1.29 7.45 2.84 5.05 -9.54 -- -3.17 2.21 12.5 0.001271 304 3.61 8.98
821.04 1.33 7.49 2.75 4.85 -9.46 -- -- 2.13 12.4 0.002431 308 3.52 8.88
982.44 1.46 7.57 2.61 -- -6.09 -- -3.15 2.07 -- 0.05616 296 3.28 8.38
1399.1 1.75 7.69 3.12 6.37 -- 3.62 -- 2.31 21.4 -- -- -- --
1446.46 1.78 7.7 2.99 6.36 -- -- -- 2.31 21.4 -- -- -- --
1007.34 1.48 7.54 2.83 -- -5.76 -- -- 2.19 -- 0.3519 247 3.47 8.4
1020.23 1.49 7.51 -- 5.08 -9.68 -- -- 1.93 12.2 0.5 306 3.51 8.98
3815.19 2.89 7.52 3.02 -- -- -- -- 2.28 -- -- -- -- --
1681.94 1.92 7.77 -- 6.37 -- -- -- 1.97 21.4 -- -- -- --
1217.2 1.62 7.62 -- -- -5.69 -- -- 1.86 -- 0.4176 241 3.53 8.5
4056.32 2.97 7.6 -- -- -- -- -- 1.95 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 783.21 precipitation 0.1 270 < th dose independent rect. 4 9
2 783.21 precipitation 0.1 270 < th dose dependent rect. 4 9
3 789.30 temperature 10.0 270 > th dose independent rect. 4 9
4 789.30 atmosphere 995.0 270 > th dose independent rect. 4 9
5 789.30 atmosphere 1015.0 270 < th dose independent rect. 4 9
6 789.30 temperature 10.0 270 > th dose independent rect. 13 15
7 790.27 wind 9.0 270 < th dose independent rect. 17 7
8 790.40 humidity 50.0 270 > th dose independent rect. 17 7
9 792.14 atmosphere 1015.0 270 < th dose independent rect. 24 17
10 792.28 temperature 10.0 270 > th dose independent rect. 17 7
11 792.28 radiation 20.0 270 < th dose independent rect. 17 7
14 792.28 temperature 10.0 270 > th dose independent rect. 24 17
15 792.70 radiation 30.0 270 < th dose dependent rect. 16 8
17 793.45 wind 9.0 270 < th dose independent rect. 4 9
22 799.41 wind 9.0 270 < th dose independent rect. 24 17
24 800.08 precipitation 0.1 270 < th dose independent rect. 17 7
25 800.08 precipitation 0.1 270 < th dose dependent rect. 17 7
27 802.13 wind 9.0 270 < th dose independent rect. 13 15
37 807.37 atmosphere 995.0 270 > th dose independent rect. 24 17
38 807.98 wind 1.0 270 > th dose independent rect. 17 7
40 810.59 precipitation 0.1 270 < th dose independent rect. 24 17
41 810.59 precipitation 0.1 270 < th dose dependent rect. 24 17
43 810.96 atmosphere 995.0 270 > th dose independent rect. 17 7
44 811.03 precipitation 0.1 270 < th dose independent rect. 18 17
45 811.03 precipitation 0.1 270 < th dose dependent rect. 18 17
56 813.13 wind 9.0 270 < th dose independent rect. 18 17
58 813.60 temperature 15.0 270 > th dose independent rect. 11 7
62 814.87 atmosphere 1015.0 270 < th dose independent rect. 11 7
63 814.87 temperature 10.0 270 > th dose independent rect. 18 17
76 819.24 humidity 50.0 270 > th dose independent rect. 18 17
78 820.49 atmosphere 995.0 270 > th dose independent rect. 18 17
81 821.02 wind 9.0 270 < th dose independent rect. 11 7
82 821.27 precipitation 0.1 270 < th dose independent rect. 11 7
83 821.27 precipitation 0.1 270 < th dose dependent rect. 11 7
87 825.50 wind 1.0 270 > th dose independent rect. 11 7
95 828.82 precipitation 0.1 270 < th dose independent rect. 17 19
96 828.82 precipitation 0.1 270 < th dose dependent rect. 17 19
114 831.96 temperature 30.0 90 < th dose independent rect. 18 7
119 833.01 precipitation 0.1 270 < th dose independent rect. 13 15
120 833.01 precipitation 0.1 270 < th dose dependent rect. 13 15
153 837.96 humidity 50.0 270 > th dose independent rect. 4 9
160 838.99 humidity 50.0 270 > th dose independent rect. 17 19
164 840.16 wind 1.0 270 > th dose independent rect. 12 5
179 847.04 atmosphere 995.0 270 > th dose independent rect. 11 7
184 847.90 atmosphere 995.0 270 > th dose independent rect. 12 5
224 856.01 radiation 20.0 270 < th dose dependent rect. 23 9
242 859.85 atmosphere 995.0 270 > th dose independent rect. 13 15
247 860.47 radiation 30.0 10 < th dose dependent rect. 1 17
254 860.98 radiation 40.0 270 < th dose independent rect. 12 5
282 865.05 radiation 1.0 270 > th dose independent rect. 12 5
350 871.92 temperature 15.0 270 > th dose independent rect. 22 9
382 874.83 radiation 10.0 270 < th dose independent rect. 23 8
393 876.20 humidity 90.0 270 < th dose independent rect. 12 5
399 877.03 humidity 50.0 270 > th dose independent rect. 24 16
400 877.21 wind 9.0 270 < th dose dependent rect. 17 6
419 880.56 humidity 70.0 270 > th dose independent rect. 22 9
432 881.53 temperature 30.0 270 < th dose independent rect. 22 9
433 881.53 humidity 50.0 270 > th dose independent rect. 22 9
435 881.53 atmosphere 995.0 270 > th dose independent rect. 22 9
437 881.53 temperature 10.0 270 > th dose independent rect. 7 15
443 882.09 wind 9.0 270 < th dose independent rect. 7 15
445 882.13 wind 9.0 270 < th dose independent rect. 22 9
481 884.81 humidity 50.0 90 > th dose dependent rect. 18 7
493 887.23 atmosphere 1015.0 270 < th dose independent rect. 23 8
525 890.74 radiation 10.0 270 < th dose dependent rect. 23 15
529 891.25 precipitation 0.1 270 < th dose independent rect. 7 15
530 891.25 precipitation 0.1 270 < th dose dependent rect. 7 15
551 894.18 radiation 1.0 270 < th dose independent rect. 8 15
553 894.59 radiation 1.0 270 < th dose dependent rect. 8 15
569 895.45 atmosphere 1015.0 270 < th dose independent rect. 12 16
589 897.15 radiation 40.0 270 < th dose independent rect. 12 16
614 899.68 radiation 40.0 270 < th dose independent rect. 13 3
615 899.68 precipitation 0.1 270 < th dose independent rect. 23 8
616 899.68 precipitation 0.1 270 < th dose dependent rect. 23 8
642 901.15 radiation 1.0 270 < th dose dependent rect. 6 17
693 905.36 radiation 1.0 270 < th dose independent rect. 23 17
713 907.32 radiation 1.0 270 > th dose independent rect. 4 8
723 907.42 atmosphere 1015.0 270 < th dose independent rect. 18 5
728 907.83 humidity 70.0 10 > th dose independent rect. 18 7
745 909.59 wind 1.0 270 > th dose independent rect. 24 17
786 912.65 temperature 30.0 270 < th dose independent rect. 18 17
817 914.64 temperature 10.0 1440 > th dose independent rect. 19 7
820 914.64 temperature 30.0 1440 < th dose independent rect. 19 7
824 914.64 humidity 50.0 1440 > th dose independent rect. 19 7
826 914.64 atmosphere 995.0 1440 > th dose independent rect. 19 7
827 914.64 radiation 1.0 1440 < th dose independent rect. 19 7
847 914.64 temperature 10.0 1440 > th dose independent rect. 2 17
850 914.67 radiation 40.0 1440 < th dose dependent rect. 19 7
854 914.76 temperature 10.0 270 > th dose dependent rect. 12 5
856 914.80 radiation 20.0 30 < th dose independent rect. 1 17
937 917.82 radiation 40.0 43200 < th dose dependent rect. 19 7
973 919.88 humidity 50.0 270 > th dose independent rect. 13 3
980 920.57 wind 1.0 270 > th dose independent rect. 17 19