Os10g0487900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0487900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.85 | 0.315 | 7.54 | -0.378 | 0.488 | -0.968 | -0.0135 | -2.38 | -0.169 | 7.08 | 19.8 | 6101 | -- | -- |
| 48.59 | 0.325 | 7.64 | -0.483 | 0.492 | -0.328 | -0.129 | -- | -0.246 | 6.73 | 23.2 | 1681 | -- | -- |
| 44.86 | 0.312 | 7.54 | -0.378 | 0.488 | -0.968 | -- | -2.38 | -0.169 | 7.08 | 19.81 | 6093 | -- | -- |
| 48.44 | 0.324 | 7.65 | -0.497 | 0.481 | -0.36 | -- | -- | -0.262 | 7.11 | 23.1 | 1500 | -- | -- |
| 57.23 | 0.352 | 7.55 | -0.373 | -- | -0.941 | -- | -2.29 | -0.159 | -- | 19.9 | 5830 | -- | -- |
| 53.88 | 0.344 | 7.61 | -0.355 | 0.486 | -- | -0.0585 | -- | -0.112 | 6.98 | -- | -- | -- | -- |
| 53.89 | 0.344 | 7.61 | -0.356 | 0.485 | -- | -- | -- | -0.112 | 7 | -- | -- | -- | -- |
| 60.35 | 0.362 | 7.66 | -0.507 | -- | -0.372 | -- | -- | -0.269 | -- | 23.4 | 1407 | -- | -- |
| 54.3 | 0.343 | 7.62 | -- | 0.475 | -0.25 | -- | -- | -0.166 | 7.21 | 23.19 | 1370 | -- | -- |
| 66.28 | 0.38 | 7.62 | -0.346 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 57.23 | 0.354 | 7.6 | -- | 0.481 | -- | -- | -- | -0.0726 | 7.05 | -- | -- | -- | -- |
| 66.19 | 0.379 | 7.64 | -- | -- | -0.261 | -- | -- | -0.167 | -- | 23.39 | 1390 | -- | -- |
| 69.44 | 0.389 | 7.61 | -- | -- | -- | -- | -- | -0.0649 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 43.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 3 | 43.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 5 | 43.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 23 | 44.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 24 | 44.65 | wind | 5 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 42 | 44.83 | wind | 5 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 49 | 44.88 | wind | 5 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 75 | 45.01 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 109 | 45.12 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 110 | 45.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 121 | 45.16 | wind | 1 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 152 | 45.23 | wind | 9 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 183 | 45.32 | wind | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 186 | 45.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 188 | 45.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 201 | 45.41 | wind | 9 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 220 | 45.48 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 221 | 45.49 | wind | 5 | 1440 | < th | dose independent | sin | 7 | NA |
| 230 | 45.52 | wind | 5 | 1440 | > th | dose independent | sin | 8 | NA |
| 231 | 45.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 2 |
| 248 | 45.56 | wind | 5 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 291 | 45.67 | wind | 9 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 300 | 45.69 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 352 | 45.80 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 380 | 45.83 | wind | 3 | 1440 | > th | dose dependent | rect. | 22 | 15 |
| 484 | 45.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 3 |
| 488 | 45.96 | wind | 7 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 520 | 45.99 | wind | 3 | 1440 | > th | dose dependent | rect. | 20 | 18 |
| 521 | 46.00 | wind | 5 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 524 | 46.00 | wind | 1 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 596 | 46.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 598 | 46.07 | wind | 5 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 626 | 46.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 633 | 46.12 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 663 | 46.15 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 699 | 46.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 18 |
| 717 | 46.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 719 | 46.21 | wind | 3 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 775 | 46.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 815 | 46.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 893 | 46.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 18 |
| 908 | 46.38 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 967 | 46.43 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |