Os10g0487300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SMAD/FHA domain containing protein.
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Os10g0487300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SMAD/FHA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.97 | 0.431 | 8.4 | -0.626 | 0.886 | 1.04 | -0.0348 | 0.393 | -0.389 | 21 | 22.19 | 2 | -- | -- |
| 84.03 | 0.43 | 8.41 | -0.693 | 0.888 | 1.09 | -0.0855 | -- | -0.41 | 21 | 22.2 | 2 | -- | -- |
| 83.94 | 0.43 | 8.4 | -0.628 | 0.886 | 1.06 | -- | 0.386 | -0.39 | 21 | 22.2 | 2 | -- | -- |
| 84.06 | 0.43 | 8.41 | -0.689 | 0.888 | 1.09 | -- | -- | -0.409 | 21 | 22.2 | 2 | -- | -- |
| 104.26 | 0.476 | 8.43 | -1.13 | -- | 1.44 | -- | -2.42 | -0.516 | -- | 24.42 | 601 | -- | -- |
| 102.3 | 0.474 | 8.37 | -0.47 | 0.934 | -- | 0.199 | -- | -0.237 | 19.2 | -- | -- | -- | -- |
| 102.4 | 0.474 | 8.37 | -0.474 | 0.934 | -- | -- | -- | -0.237 | 19.3 | -- | -- | -- | -- |
| 107.03 | 0.482 | 8.37 | -0.709 | -- | 1.21 | -- | -- | -0.36 | -- | 24.4 | 523 | -- | -- |
| 95.57 | 0.458 | 8.38 | -- | 0.869 | 0.884 | -- | -- | -0.289 | 20.7 | 23.4 | 2 | -- | -- |
| 148.66 | 0.57 | 8.35 | -0.491 | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
| 108.33 | 0.487 | 8.36 | -- | 0.939 | -- | -- | -- | -0.184 | 19.2 | -- | -- | -- | -- |
| 119.86 | 0.51 | 8.35 | -- | -- | 1.09 | -- | -- | -0.274 | -- | 24.5 | 508 | -- | -- |
| 155.01 | 0.581 | 8.33 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 2 | 71.61 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 12 | 73.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 15 | 73.22 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 77 | 75.39 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 118 | 76.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 131 | 76.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 135 | 76.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 214 | 78.55 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 271 | 79.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 319 | 80.15 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 324 | 80.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 337 | 80.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 426 | 81.05 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 507 | 81.66 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 603 | 82.17 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 15 |
| 605 | 82.18 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 15 |
| 708 | 82.71 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 734 | 82.84 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 22 |
| 788 | 83.18 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 14 |
| 830 | 83.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 849 | 83.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 957 | 83.78 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 988 | 83.92 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 995 | 83.95 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 19 |