Os10g0486000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Metal-dependent phosphohydrolase, HD region domain containing protein.
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Os10g0486000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Metal-dependent phosphohydrolase, HD region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.82 | 0.204 | 10.2 | -1.07 | 0.342 | -0.333 | -0.909 | 1.89 | -0.16 | 4.07 | 1.089 | 734 | -- | -- |
| 19.32 | 0.205 | 10.2 | -1.04 | 0.241 | -0.487 | 0.732 | -- | -0.169 | 6.95 | 0.3923 | 1072 | -- | -- |
| 18.83 | 0.202 | 10.2 | -1.08 | 0.158 | -0.209 | -- | 1.3 | -0.161 | 3.15 | 0.8118 | 1076 | -- | -- |
| 20.41 | 0.21 | 10.2 | -1.02 | 0.152 | -0.28 | -- | -- | -0.167 | 2.71 | 0.007985 | 1348 | -- | -- |
| 19.88 | 0.208 | 10.2 | -1.1 | -- | -0.217 | -- | 1.16 | -0.162 | -- | 1.04 | 1201 | -- | -- |
| 20.93 | 0.214 | 10.2 | -0.969 | 0.15 | -- | -0.339 | -- | -0.123 | 23.7 | -- | -- | -- | -- |
| 21.25 | 0.216 | 10.2 | -0.957 | 0.161 | -- | -- | -- | -0.123 | 1.1 | -- | -- | -- | -- |
| 21.04 | 0.214 | 10.2 | -1.03 | -- | -0.386 | -- | -- | -0.175 | -- | 0.05998 | 1323 | -- | -- |
| 45.29 | 0.313 | 10.2 | -- | 0.125 | -0.128 | -- | -- | -0.0477 | 2.34 | 10 | 1249 | -- | -- |
| 22.86 | 0.223 | 10.2 | -0.951 | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
| 45.41 | 0.315 | 10.2 | -- | 0.146 | -- | -- | -- | -0.0164 | 0.839 | -- | -- | -- | -- |
| 45.28 | 0.313 | 10.2 | -- | -- | 0.136 | -- | -- | -0.00921 | -- | 17.09 | 155 | -- | -- |
| 46.73 | 0.319 | 10.2 | -- | -- | -- | -- | -- | -0.0143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 4 | 18.31 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 9 |
| 5 | 18.31 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 17 |
| 20 | 18.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 13 |
| 22 | 18.37 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 11 | 7 |
| 31 | 18.40 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 13 |
| 33 | 18.40 | radiation | 1 | 720 | < th | dose dependent | sin | 19 | NA |
| 55 | 18.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 71 | 18.47 | radiation | 1 | 720 | < th | dose independent | sin | 17 | NA |
| 72 | 18.47 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 9 |
| 73 | 18.47 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 74 | 18.47 | temperature | 15 | 720 | > th | dose independent | rect. | 7 | 16 |
| 77 | 18.48 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 80 | 18.48 | temperature | 15 | 720 | > th | dose independent | rect. | 15 | 8 |
| 84 | 18.49 | temperature | 15 | 90 | > th | dose independent | sin | 9 | NA |
| 85 | 18.49 | temperature | 15 | 270 | > th | dose independent | sin | 18 | NA |
| 86 | 18.49 | temperature | 15 | 90 | > th | dose independent | sin | 3 | NA |
| 93 | 18.50 | temperature | 15 | 90 | > th | dose independent | sin | 16 | NA |
| 98 | 18.50 | humidity | 90 | 720 | < th | dose independent | rect. | 11 | 7 |
| 101 | 18.50 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 14 |
| 102 | 18.50 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 9 | 14 |
| 139 | 18.53 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 6 |
| 160 | 18.54 | atmosphere | 1010 | 720 | < th | dose independent | sin | 20 | NA |
| 162 | 18.54 | temperature | 15 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 186 | 18.56 | temperature | 15 | 10 | > th | dose independent | sin | 7 | NA |
| 223 | 18.56 | temperature | 15 | 10 | > th | dose independent | sin | 1 | NA |
| 235 | 18.56 | atmosphere | 1010 | 10 | < th | dose independent | sin | 15 | NA |
| 239 | 18.56 | temperature | 15 | 720 | > th | dose independent | rect. | 13 | 10 |
| 247 | 18.57 | temperature | 15 | 720 | > th | dose independent | rect. | 11 | 8 |
| 248 | 18.57 | temperature | 15 | 720 | > th | dose independent | rect. | 13 | 8 |
| 304 | 18.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 338 | 18.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 339 | 18.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 354 | 18.66 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 3 |
| 465 | 18.71 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 467 | 18.71 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 473 | 18.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 487 | 18.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 503 | 18.74 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 537 | 18.76 | temperature | 15 | 720 | > th | dose dependent | sin | 19 | NA |
| 586 | 18.79 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 597 | 18.79 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 621 | 18.80 | humidity | 90 | 720 | < th | dose independent | rect. | 9 | 12 |
| 651 | 18.81 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 11 |
| 668 | 18.82 | humidity | 90 | 720 | < th | dose independent | sin | 22 | NA |
| 672 | 18.82 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 9 |
| 722 | 18.84 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 734 | 18.84 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 744 | 18.85 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 821 | 18.86 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 839 | 18.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 847 | 18.87 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 12 |
| 860 | 18.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 870 | 18.88 | temperature | 15 | 90 | > th | dose independent | rect. | 21 | 10 |
| 892 | 18.89 | temperature | 15 | 270 | > th | dose independent | rect. | 15 | 12 |
| 917 | 18.90 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 23 |
| 918 | 18.90 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 23 |
| 924 | 18.90 | temperature | 20 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 931 | 18.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 965 | 18.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 2 | 16 |
| 993 | 18.92 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 20 |
| 996 | 18.92 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 23 |