Os10g0485800 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0485800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.32	(0.0564)	R²	:	0.427
β₁	:	2.89	(0.18)	R²_dD	:	0.342	R²_D	:	0.31
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	1.37	(0.208)	R²_dE	:	0.132	R²_E	:	0.0776
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0856	(0.163)	R²_dN8	:	0.00103	R²_N8	:	-0.00928
σ	:	0.914
deviance	:	385.16
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	77.55
memory length	:	4252
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	3.83
open length of G	:	4.33

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
368.78	0.902	5.33	3.1	0.498	1.52	0.189	1.73	-0.109	5.75	77.94	4251	3.48	4.65
372.28	0.899	5.31	2.87	0.505	1.43	0.267	--	-0.0821	5.65	77.44	4236	3.73	4.57
368.84	0.894	5.33	3.09	0.5	1.52	--	1.72	-0.108	5.79	77.91	4251	3.5	4.63
372.28	0.899	5.32	2.87	0.516	1.44	--	--	-0.115	5.67	77.48	4234	3.72	4.52
381.39	0.91	5.33	3.14	--	1.44	--	1.85	-0.045	--	77.58	4252	3.55	4.62
411.76	0.951	5.13	2.99	0.385	--	0.536	--	0.735	5.6	--	--	--	--
412.44	0.951	5.13	2.99	0.389	--	--	--	0.733	5.79	--	--	--	--
385.16	0.914	5.32	2.89	--	1.37	--	--	-0.0856	--	77.55	4252	3.83	4.33
577.85	1.12	5.35	--	0.526	1.58	--	--	-0.228	5.71	77.74	4154	4.29	4.47
420.3	0.958	5.13	3	--	--	--	--	0.742	--	--	--	--	--
648.53	1.19	5.2	--	0.437	--	--	--	0.4	5.47	--	--	--	--
563.96	1.11	5.22	--	--	1.32	--	--	0.299	--	76.82	3013	4.33	3.93
658.49	1.2	5.21	--	--	--	--	--	0.409	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	374.10	wind	9.0	14400	> th	dose independent	rect.	6	6
5	374.71	wind	9.0	14400	< th	dose independent	rect.	4	9
6	374.72	wind	9.0	14400	> th	dose independent	rect.	10	2
7	374.72	wind	9.0	14400	< th	dose independent	rect.	6	6
9	374.89	humidity	80.0	4320	< th	dose dependent	rect.	2	6
11	375.08	wind	9.0	14400	> th	dose dependent	rect.	5	8
14	375.19	atmosphere	1005.0	14400	< th	dose independent	rect.	23	1
16	375.26	wind	9.0	14400	< th	dose independent	rect.	1	12
25	375.73	wind	9.0	14400	> th	dose dependent	rect.	10	3
36	376.31	wind	9.0	14400	< th	dose independent	rect.	10	2
47	376.98	wind	1.0	43200	> th	dose independent	rect.	16	14
50	377.37	atmosphere	1005.0	14400	> th	dose independent	rect.	12	1
53	377.58	wind	3.0	14400	> th	dose independent	rect.	1	3
55	377.68	wind	9.0	14400	> th	dose dependent	rect.	12	1
62	377.96	atmosphere	1005.0	14400	< th	dose independent	rect.	12	1
63	378.02	humidity	80.0	4320	< th	dose independent	rect.	3	5
64	378.02	wind	1.0	43200	< th	dose independent	rect.	16	14
67	378.08	wind	3.0	14400	> th	dose independent	rect.	2	1
73	378.18	wind	1.0	43200	> th	dose independent	rect.	19	11
89	378.91	wind	1.0	43200	> th	dose independent	sin	12	NA
93	379.06	wind	7.0	43200	> th	dose independent	rect.	18	1
98	379.18	atmosphere	1005.0	14400	> th	dose independent	rect.	22	2
101	379.20	wind	3.0	14400	< th	dose independent	rect.	1	3
105	379.21	wind	7.0	43200	> th	dose dependent	rect.	18	1
107	379.24	precipitation	0.1	14400	> th	dose independent	rect.	17	1
109	379.27	wind	1.0	43200	> th	dose independent	rect.	22	7
110	379.27	humidity	90.0	14400	> th	dose dependent	rect.	2	8
113	379.35	wind	1.0	43200	< th	dose independent	sin	12	NA
129	379.63	atmosphere	1005.0	14400	< th	dose independent	rect.	12	16
134	379.74	precipitation	0.1	14400	> th	dose independent	rect.	3	13
139	379.77	precipitation	0.1	14400	< th	dose independent	rect.	3	13
141	379.77	precipitation	0.1	14400	< th	dose dependent	rect.	3	13
147	379.85	wind	3.0	14400	< th	dose independent	rect.	2	1
150	379.87	atmosphere	1005.0	14400	< th	dose independent	rect.	16	12
160	379.94	humidity	90.0	14400	> th	dose dependent	rect.	3	1
193	380.21	atmosphere	1005.0	14400	< th	dose independent	sin	14	NA
207	380.34	precipitation	0.1	14400	> th	dose dependent	rect.	3	10
214	380.39	precipitation	0.1	14400	> th	dose dependent	rect.	3	13
216	380.41	precipitation	0.1	14400	< th	dose independent	rect.	3	10
217	380.41	precipitation	0.1	14400	< th	dose dependent	rect.	3	10
223	380.44	wind	1.0	43200	< th	dose independent	rect.	22	7
241	380.55	humidity	80.0	4320	< th	dose dependent	rect.	22	11
246	380.58	wind	1.0	43200	< th	dose independent	rect.	20	9
249	380.60	precipitation	0.1	14400	> th	dose independent	rect.	3	10
264	380.71	wind	3.0	1440	< th	dose dependent	rect.	11	2
268	380.74	humidity	80.0	4320	> th	dose independent	rect.	2	6
275	380.83	precipitation	0.1	14400	> th	dose independent	rect.	7	1
278	380.83	precipitation	0.1	14400	> th	dose dependent	rect.	7	1
285	380.86	wind	1.0	43200	< th	dose independent	rect.	19	11
287	380.86	precipitation	0.1	14400	> th	dose dependent	rect.	24	16
292	380.90	atmosphere	1005.0	14400	< th	dose independent	rect.	3	1
305	380.99	atmosphere	1005.0	14400	> th	dose independent	rect.	3	1
306	380.99	atmosphere	1005.0	14400	> th	dose independent	rect.	21	7
316	381.05	atmosphere	1005.0	14400	> th	dose independent	rect.	11	18
321	381.09	atmosphere	1005.0	14400	> th	dose independent	rect.	16	12
382	381.39	precipitation	0.1	14400	> th	dose dependent	rect.	17	1
388	381.42	humidity	80.0	4320	< th	dose independent	rect.	23	11
400	381.48	precipitation	0.1	14400	< th	dose independent	rect.	17	1
405	381.48	precipitation	0.1	14400	< th	dose dependent	rect.	17	1
417	381.54	atmosphere	1005.0	14400	> th	dose independent	sin	14	NA
429	381.59	atmosphere	1005.0	14400	> th	dose independent	rect.	16	8
433	381.60	atmosphere	1005.0	14400	< th	dose independent	rect.	20	22
482	381.77	atmosphere	1005.0	14400	> th	dose independent	rect.	21	17
493	381.80	atmosphere	1005.0	14400	> th	dose independent	rect.	16	22
518	381.87	atmosphere	1005.0	14400	> th	dose independent	rect.	20	22
550	381.93	atmosphere	1005.0	14400	< th	dose independent	rect.	16	23
597	382.03	atmosphere	1005.0	14400	< th	dose independent	no	NA	NA
626	382.10	precipitation	0.1	14400	< th	dose independent	rect.	4	6
632	382.10	atmosphere	1005.0	14400	< th	dose independent	rect.	1	23
635	382.10	precipitation	0.1	14400	< th	dose dependent	rect.	4	6
691	382.22	atmosphere	1005.0	14400	> th	dose independent	rect.	1	23
712	382.26	humidity	90.0	14400	> th	dose dependent	rect.	2	15
713	382.26	wind	1.0	43200	< th	dose dependent	rect.	16	16
715	382.27	atmosphere	1005.0	14400	> th	dose independent	no	NA	NA
740	382.32	precipitation	0.1	14400	> th	dose independent	rect.	14	2
745	382.32	precipitation	0.1	14400	> th	dose dependent	rect.	14	2
761	382.36	precipitation	0.1	14400	< th	dose independent	rect.	4	1
764	382.36	precipitation	0.1	14400	< th	dose dependent	rect.	4	1
774	382.38	radiation	10.0	14400	< th	dose dependent	rect.	23	2
822	382.49	precipitation	0.1	14400	< th	dose independent	rect.	7	1
828	382.49	precipitation	0.1	14400	< th	dose dependent	rect.	7	1
885	382.65	precipitation	0.1	14400	> th	dose independent	rect.	4	6
910	382.68	atmosphere	1005.0	14400	> th	dose independent	rect.	1	13
916	382.69	precipitation	0.1	14400	> th	dose dependent	rect.	4	6
954	382.77	humidity	70.0	1440	> th	dose dependent	rect.	24	11
983	382.87	precipitation	0.1	14400	> th	dose independent	rect.	4	1