Os10g0485400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0485400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.49 | 0.635 | 7.3 | 1.85 | 0.726 | -2 | -0.484 | 1.77 | -3.95 | 22.6 | 9.94 | 11 | -- | -- |
| 184.66 | 0.633 | 7.33 | 1.59 | 0.735 | -1.95 | -0.838 | -- | -4.02 | 22.6 | 8.469 | 17 | -- | -- |
| 183.27 | 0.631 | 7.29 | 1.93 | 0.729 | -2 | -- | 2.24 | -3.93 | 22.6 | 8.896 | 11 | -- | -- |
| 187.53 | 0.638 | 7.33 | 1.63 | 0.739 | -1.97 | -- | -- | -4.02 | 22.5 | 7.706 | 17 | -- | -- |
| 211.38 | 0.681 | 7.26 | 2.03 | -- | -2.55 | -- | 2.28 | -3.86 | -- | 11.55 | 6 | -- | -- |
| 222.06 | 0.699 | 7.39 | 1.21 | 1.13 | -- | -0.7 | -- | -4.3 | 0.14 | -- | -- | -- | -- |
| 224.18 | 0.701 | 7.39 | 1.24 | 1.13 | -- | -- | -- | -4.29 | 0.157 | -- | -- | -- | -- |
| 215.68 | 0.687 | 7.29 | 1.72 | -- | -2.51 | -- | -- | -3.95 | -- | 11.55 | 6 | -- | -- |
| 250.11 | 0.741 | 7.39 | -- | 0.883 | -1.17 | -- | -- | -4.29 | 23.5 | 8.905 | 22 | -- | -- |
| 304.9 | 0.816 | 7.37 | 1.27 | -- | -- | -- | -- | -4.28 | -- | -- | -- | -- | -- |
| 264.6 | 0.761 | 7.42 | -- | 1.15 | -- | -- | -- | -4.43 | 0.216 | -- | -- | -- | -- |
| 289.66 | 0.795 | 7.35 | -- | -- | -1.97 | -- | -- | -4.2 | -- | 11.55 | 6 | -- | -- |
| 347.78 | 0.87 | 7.4 | -- | -- | -- | -- | -- | -4.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.76 | temperature | 10 | 10 | > th | dose dependent | sin | 16 | NA |
| 28 | 172.68 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 50 | 174.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 90 | 177.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 108 | 178.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 119 | 178.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 130 | 179.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 13 |
| 133 | 179.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 150 | 179.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 8 |
| 162 | 179.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 11 |
| 170 | 179.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 198 | 180.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 215 | 180.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 262 | 181.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 347 | 182.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 348 | 182.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 353 | 182.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 387 | 182.47 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 392 | 182.50 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 408 | 182.67 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 495 | 183.42 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 11 |
| 500 | 183.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 518 | 183.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 565 | 183.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 579 | 183.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 601 | 184.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 631 | 184.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 651 | 184.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 664 | 184.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 23 |
| 703 | 184.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 743 | 184.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 770 | 185.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 774 | 185.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 805 | 185.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 808 | 185.35 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 13 |
| 825 | 185.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 826 | 185.48 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 870 | 185.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 894 | 185.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 898 | 185.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 902 | 185.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 921 | 185.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 945 | 186.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 961 | 186.14 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |