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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0484800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Type III polyketide synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0195) R2 : 0.00145
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0333 (0.041) R2dN8 : 0.00187 R2N8 : 0.00145
σ : 0.367
deviance : 61.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.55 0.356 3.03 -0.00274 0.622 0.516 -0.95 -1.06 0.0496 13 7.074 271 -- --
58.35 0.356 3.03 -0.0408 0.517 0.394 0.0884 -- 0.0384 12.4 7.61 221 -- --
58 0.355 3.03 -0.04 0.594 0.484 -- -0.229 0.0432 12.9 7.519 264 -- --
58.25 0.355 3.03 -0.0396 0.59 0.48 -- -- 0.042 12.9 7.67 264 -- --
59.87 0.36 3.04 -0.023 -- 0.251 -- -0.354 0.0482 -- 6.533 995 -- --
59.93 0.363 3.04 -0.0514 0.174 -- -0.0759 -- 0.0257 8.47 -- -- -- --
59.95 0.363 3.04 -0.0536 0.173 -- -- -- 0.0259 8.57 -- -- -- --
60.04 0.361 3.04 -0.0407 -- 0.247 -- -- 0.0428 -- 6.33 998 -- --
58.29 0.356 3.03 -- 0.601 0.49 -- -- 0.0466 12.9 7.412 266 -- --
61.64 0.367 3.04 -0.053 -- -- -- -- 0.0274 -- -- -- -- --
60.02 0.362 3.04 -- 0.173 -- -- -- 0.0318 8.6 -- -- -- --
60.08 0.361 3.04 -- -- 0.249 -- -- 0.0473 -- 6.122 998 -- --
61.71 0.367 3.04 -- -- -- -- -- 0.0333 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.51 humidity 90.0 90 < th dose independent rect. 20 1
2 56.51 wind 1.0 90 < th dose dependent rect. 8 1
3 56.90 wind 1.0 270 < th dose independent rect. 18 1
4 56.90 wind 1.0 270 < th dose dependent rect. 18 1
5 57.02 wind 5.0 30 < th dose dependent rect. 20 1
9 57.09 atmosphere 1005.0 10 > th dose dependent rect. 20 1
10 57.10 humidity 80.0 30 > th dose independent rect. 20 1
11 57.10 atmosphere 1005.0 30 > th dose independent rect. 20 1
12 57.11 temperature 20.0 30 > th dose independent rect. 20 1
18 57.14 wind 1.0 90 < th dose independent rect. 8 1
19 57.14 humidity 60.0 30 > th dose dependent rect. 20 1
21 57.15 wind 7.0 30 < th dose independent rect. 20 1
24 57.16 wind 7.0 90 > th dose independent rect. 22 1
27 57.16 wind 7.0 90 > th dose dependent rect. 22 1
29 57.17 wind 1.0 30 > th dose independent rect. 20 1
31 57.17 temperature 10.0 30 > th dose independent rect. 20 1
33 57.17 temperature 30.0 30 < th dose independent rect. 20 1
34 57.17 humidity 50.0 30 > th dose independent rect. 20 1
38 57.17 atmosphere 1010.0 30 < th dose independent rect. 20 1
40 57.17 radiation 1.0 30 < th dose independent rect. 20 1
45 57.17 precipitation 0.1 30 < th dose independent rect. 20 1
46 57.17 temperature 10.0 30 > th dose independent rect. 21 23
47 57.17 radiation 1.0 30 < th dose dependent rect. 20 1
52 57.17 radiation 10.0 1440 < th dose dependent rect. 21 1
54 57.17 precipitation 0.1 30 < th dose dependent rect. 20 1
58 57.19 temperature 10.0 1440 > th dose independent rect. 21 1
61 57.19 temperature 30.0 1440 < th dose independent rect. 21 1
65 57.19 humidity 50.0 1440 > th dose independent rect. 21 1
71 57.19 atmosphere 995.0 1440 > th dose independent rect. 21 1
72 57.19 radiation 1.0 1440 < th dose independent rect. 21 1
92 57.19 temperature 10.0 1440 > th dose independent rect. 22 23
95 57.19 temperature 10.0 30 > th dose dependent rect. 20 1
96 57.20 wind 9.0 1440 < th dose independent rect. 21 1
98 57.21 wind 1.0 10 < th dose independent rect. 21 1
102 57.21 radiation 30.0 1440 < th dose independent rect. 16 15
103 57.21 wind 1.0 10 < th dose dependent rect. 21 1
111 57.23 radiation 30.0 1440 > th dose independent rect. 16 1
126 57.23 wind 1.0 90 < th dose dependent rect. 21 1
127 57.23 temperature 30.0 30 < th dose dependent rect. 20 1
129 57.24 wind 9.0 30 < th dose independent rect. 21 23
148 57.28 wind 1.0 10 < th dose dependent rect. 11 11
150 57.29 atmosphere 995.0 1440 > th dose independent rect. 13 19
169 57.32 atmosphere 1015.0 30 < th dose dependent rect. 20 1
176 57.34 wind 1.0 30 > th dose dependent rect. 20 1
181 57.35 atmosphere 995.0 1440 > th dose independent rect. 13 23
193 57.38 radiation 10.0 1440 > th dose independent rect. 5 1
208 57.38 radiation 10.0 1440 > th dose dependent rect. 5 1
226 57.41 humidity 90.0 30 < th dose dependent rect. 20 1
232 57.43 radiation 30.0 1440 < th dose independent rect. 16 4
249 57.46 wind 1.0 10 < th dose independent rect. 12 10
296 57.49 atmosphere 995.0 1440 > th dose independent rect. 18 14
307 57.54 atmosphere 1005.0 30 > th dose dependent rect. 4 1
309 57.55 atmosphere 995.0 1440 > th dose independent rect. 16 16
311 57.56 atmosphere 995.0 1440 > th dose independent rect. 3 12
315 57.58 radiation 10.0 270 < th dose dependent rect. 12 22
316 57.58 radiation 10.0 90 < th dose dependent rect. 19 23
317 57.60 atmosphere 995.0 1440 > th dose independent rect. 13 12
319 57.61 atmosphere 995.0 1440 > th dose independent rect. 3 14
322 57.62 atmosphere 995.0 1440 > th dose independent rect. 10 22
330 57.67 radiation 10.0 270 < th dose dependent rect. 17 23
339 57.69 radiation 10.0 270 < th dose dependent rect. 5 23
340 57.70 atmosphere 995.0 1440 > th dose independent rect. 14 1
348 57.71 atmosphere 995.0 1440 > th dose independent rect. 13 9
351 57.71 wind 3.0 90 < th dose dependent rect. 6 16
353 57.72 atmosphere 995.0 1440 > th dose independent sin 12 NA
356 57.72 atmosphere 995.0 1440 > th dose independent rect. 16 19
358 57.72 atmosphere 995.0 1440 > th dose independent rect. 18 23
359 57.72 temperature 25.0 720 > th dose dependent rect. 3 1
364 57.73 radiation 10.0 270 < th dose dependent no NA NA
367 57.74 atmosphere 995.0 1440 > th dose independent rect. 13 6
370 57.75 atmosphere 995.0 1440 > th dose independent rect. 13 4
372 57.75 radiation 10.0 270 < th dose dependent rect. 8 23
373 57.76 atmosphere 995.0 1440 > th dose independent sin 3 NA
377 57.76 atmosphere 995.0 1440 > th dose independent rect. 2 23
390 57.77 atmosphere 995.0 1440 > th dose independent rect. 21 22
399 57.78 atmosphere 995.0 1440 > th dose independent rect. 16 23
405 57.80 atmosphere 995.0 1440 > th dose independent rect. 18 18
423 57.82 atmosphere 995.0 1440 > th dose independent rect. 24 22
430 57.83 wind 1.0 720 < th dose dependent rect. 12 2
433 57.84 atmosphere 995.0 1440 > th dose independent rect. 24 19
434 57.84 atmosphere 995.0 1440 > th dose independent rect. 21 20
450 57.87 atmosphere 995.0 1440 < th dose independent rect. 18 1
483 57.87 atmosphere 995.0 1440 < th dose dependent rect. 18 1
507 57.88 atmosphere 995.0 1440 < th dose independent sin 8 NA
511 57.88 atmosphere 995.0 4320 < th dose independent rect. 16 2
542 57.88 temperature 20.0 90 > th dose dependent rect. 4 1
544 57.88 atmosphere 995.0 4320 < th dose dependent rect. 16 1
546 57.88 atmosphere 995.0 4320 < th dose dependent rect. 16 3
559 57.89 atmosphere 995.0 1440 < th dose independent no NA NA
674 57.89 atmosphere 995.0 1440 > th dose independent rect. 24 17
803 57.89 atmosphere 995.0 1440 < th dose dependent sin 8 NA
864 57.90 atmosphere 995.0 1440 > th dose independent no NA NA
936 57.90 atmosphere 995.0 1440 < th dose dependent no NA NA