Os10g0484300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os10g0484300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.15 | 0.37 | 10.4 | -0.834 | 1.53 | -0.212 | -0.816 | 2.36 | -0.459 | 10.9 | 20.7 | 3876 | -- | -- |
| 68.75 | 0.386 | 10.4 | -0.805 | 1.59 | -0.878 | -0.462 | -- | -0.447 | 10.8 | 16.7 | 24078 | -- | -- |
| 64.91 | 0.375 | 10.4 | -0.8 | 1.54 | -0.197 | -- | 2.48 | -0.45 | 10.9 | 21.1 | 3866 | -- | -- |
| 71.25 | 0.393 | 10.4 | -0.796 | 1.6 | -0.929 | -- | -- | -0.471 | 10.9 | 16.8 | 23983 | -- | -- |
| 203.84 | 0.665 | 10.4 | -0.883 | -- | -0.699 | -- | 1.85 | -0.437 | -- | 20 | 2391 | -- | -- |
| 76.61 | 0.41 | 10.5 | -1.62 | 1.54 | -- | -0.943 | -- | -0.732 | 11 | -- | -- | -- | -- |
| 80.36 | 0.42 | 10.5 | -1.66 | 1.54 | -- | -- | -- | -0.736 | 10.9 | -- | -- | -- | -- |
| 207.64 | 0.671 | 10.5 | -0.947 | -- | -0.81 | -- | -- | -0.525 | -- | 19.61 | 816 | -- | -- |
| 76.36 | 0.407 | 10.4 | -- | 1.53 | -1.48 | -- | -- | -0.273 | 10.9 | 16.47 | 47520 | -- | -- |
| 228.11 | 0.706 | 10.5 | -1.69 | -- | -- | -- | -- | -0.747 | -- | -- | -- | -- | -- |
| 152.87 | 0.578 | 10.5 | -- | 1.56 | -- | -- | -- | -0.551 | 11 | -- | -- | -- | -- |
| 221.59 | 0.693 | 10.4 | -- | -- | -1.53 | -- | -- | -0.262 | -- | 16.73 | 47520 | -- | -- |
| 303.66 | 0.813 | 10.5 | -- | -- | -- | -- | -- | -0.559 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 2 | 60.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 5 | 60.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 7 | 60.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 15 | 60.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 19 | 60.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 31 | 60.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 43 | 60.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 51 | 60.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 58 | 60.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 85 | 61.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 215 | 61.86 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 227 | 61.91 | radiation | 30 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 228 | 61.92 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 234 | 61.95 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 399 | 62.70 | radiation | 10 | 10 | < th | dose dependent | sin | 0 | NA |
| 421 | 62.78 | radiation | 10 | 90 | < th | dose dependent | sin | 1 | NA |
| 480 | 63.03 | radiation | 20 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 481 | 63.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 483 | 63.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 531 | 63.20 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 613 | 63.47 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 627 | 63.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 662 | 63.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 686 | 63.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 703 | 63.70 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 723 | 63.77 | radiation | 10 | 10 | < th | dose independent | sin | 23 | NA |
| 771 | 63.86 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 774 | 63.88 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 787 | 63.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 791 | 63.90 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 859 | 64.03 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 862 | 64.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 911 | 64.09 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 926 | 64.11 | radiation | 30 | 14400 | < th | dose dependent | rect. | 19 | 10 |