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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0483400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0546) R2 : 0.543
β1 : -0.453 (0.271) R2dD : 0.00709 R2D : -0.0113
β2 : 0.0982 (0.113) R2dC : 0.000767 R2C : -0.0974
β3 : -2.3 (0.18) R2dE : 0.223 R2E : 0.0713
β4 : 2.58 (0.428) R2dD*C : 0.0368 R2D*C : -0.0385
β5 : 5.32 (0.726) R2dD*E : 0.129 R2D*E : 0.141
γ1 : 1.41 (0.127) R2dN8 : 0.261 R2N8 : -0.0185
σ : 0.893
deviance : 361.63
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C
peak time of C : 23.6
E
wheather : temperature
threshold : 16.49
memory length : 1449
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.62
open length of G : 0.47

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
361.63 0.893 3.82 -0.453 0.0982 -2.3 2.58 5.32 1.41 23.6 16.49 1449 2.62 0.47
403.39 0.935 4.01 -1.88 0.0717 -2.14 2.57 -- 0.996 0.224 16.35 1450 2.55 0.65
390.19 0.92 3.82 -0.572 0.104 -2.34 -- 5.43 1.41 22.5 16.49 1450 2.66 0.476
433.5 0.97 4.01 -2.01 0.092 -2.18 -- -- 0.961 23.4 16.35 1450 2.62 0.538
390.85 0.921 3.82 -0.546 -- -2.33 -- 5.5 1.41 -- 16.5 1450 2.67 0.467
519.65 1.07 4.13 -2.7 0.059 -- -2.69 -- 0.361 13 -- -- -- --
546.66 1.09 4.15 -2.8 0.261 -- -- -- 0.351 17.9 -- -- -- --
432.47 0.969 4.01 -1.99 -- -2.36 -- -- 0.977 -- 15.29 1450 2.53 0.6
450.24 0.988 3.96 -- 0.00199 -2.89 -- -- 1.37 11.5 16.62 20747 2.49 0.732
550.2 1.1 4.14 -2.8 -- -- -- -- 0.345 -- -- -- -- --
752.62 1.28 4.08 -- 0.306 -- -- -- 0.663 17.5 -- -- -- --
446.1 0.984 3.91 -- -- -2.98 -- -- 1.44 -- 14.9 22207 1.9 1.33
757.48 1.28 4.07 -- -- -- -- -- 0.656 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 333.92 radiation 40 14400 < th dose independent rect. 6 2
3 334.03 radiation 40 14400 < th dose independent rect. 22 10
5 334.19 radiation 40 14400 < th dose independent rect. 2 6
12 335.45 radiation 40 14400 < th dose independent rect. 17 15
33 350.62 radiation 30 43200 > th dose dependent rect. 7 1
48 350.99 temperature 15 43200 < th dose independent rect. 1 1
50 351.82 temperature 15 43200 > th dose independent rect. 1 1
54 352.25 temperature 15 43200 > th dose independent rect. 1 3
58 352.86 temperature 15 43200 > th dose independent rect. 3 1
71 353.83 temperature 15 43200 < th dose independent rect. 18 10
73 353.90 temperature 15 43200 > th dose independent rect. 22 6
74 353.95 radiation 20 43200 > th dose independent rect. 6 1
89 354.15 temperature 15 43200 < th dose independent rect. 24 7
93 354.18 temperature 15 43200 > th dose independent rect. 17 11
98 354.32 temperature 15 43200 < th dose independent rect. 22 9
102 354.38 temperature 15 43200 > th dose independent rect. 13 15
105 354.45 temperature 15 43200 < th dose independent rect. 17 14
118 354.56 temperature 15 43200 < th dose independent rect. 13 15
126 354.66 temperature 15 43200 < th dose independent sin 12 NA
152 354.93 temperature 15 43200 < th dose independent rect. 13 18
235 355.76 temperature 15 43200 > th dose independent sin 14 NA
243 355.81 temperature 15 43200 < th dose independent rect. 24 15
254 355.88 temperature 15 43200 < th dose independent rect. 22 17
291 356.14 temperature 15 43200 < th dose independent rect. 23 21
397 356.62 temperature 15 43200 < th dose independent rect. 5 23
412 356.73 temperature 15 43200 < th dose independent no NA NA
437 356.89 temperature 15 43200 > th dose independent rect. 22 22
454 357.03 temperature 15 43200 > th dose independent rect. 24 20
485 357.33 temperature 15 43200 > th dose independent rect. 17 22
517 357.54 temperature 15 43200 > th dose independent no NA NA
604 358.20 temperature 15 43200 > th dose independent rect. 24 8
653 358.78 temperature 15 43200 < th dose independent rect. 5 2
731 359.60 radiation 10 43200 > th dose dependent rect. 5 1
765 360.53 atmosphere 1015 43200 > th dose independent rect. 18 2
798 360.95 radiation 1 14400 > th dose independent rect. 10 2
808 361.15 atmosphere 1015 43200 > th dose independent rect. 14 6
813 361.37 atmosphere 1015 43200 < th dose independent rect. 15 5
858 361.82 radiation 1 43200 < th dose independent rect. 10 1
859 361.82 radiation 1 43200 < th dose dependent rect. 10 1
874 362.03 temperature 15 43200 > th dose independent rect. 10 5
882 362.14 radiation 40 43200 < th dose independent rect. 15 6
884 362.16 radiation 40 43200 < th dose independent rect. 15 9
894 362.29 radiation 40 43200 < th dose independent rect. 15 14
898 362.38 radiation 40 43200 < th dose independent rect. 15 11
899 362.39 radiation 40 43200 < th dose independent rect. 15 2
919 362.66 atmosphere 1015 43200 < th dose independent rect. 17 2
943 362.82 radiation 1 14400 > th dose independent rect. 8 5
951 362.89 temperature 15 43200 < th dose dependent rect. 2 1
957 362.94 atmosphere 1015 43200 > th dose independent rect. 15 1
977 363.11 atmosphere 1015 43200 < th dose independent rect. 15 1
981 363.15 radiation 1 14400 < th dose dependent rect. 9 4
993 363.33 radiation 1 43200 > th dose independent rect. 8 1
1000 363.36 radiation 1 43200 < th dose dependent rect. 8 1