Os10g0482000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os10g0482000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 318.64 | 0.839 | 3.99 | 3.05 | 0.398 | -2.09 | 1.38 | 23.6 | -0.243 | 20.6 | 30.51 | 4246 | -- | -- |
| 354.85 | 0.884 | 4.46 | -0.531 | 0.525 | 0.946 | 1.14 | -- | -0.472 | 23 | -305.4 | 47520 | -- | -- |
| 324.65 | 0.839 | 3.99 | 3.05 | 0.392 | -2.13 | -- | 24 | -0.236 | 20.5 | 30.71 | 4247 | -- | -- |
| 360.21 | 0.89 | 4.47 | -0.586 | 0.526 | 0.979 | -- | -- | -0.482 | 23.4 | -337.5 | 47520 | -- | -- |
| 333.36 | 0.85 | 3.99 | 2.91 | -- | -2.01 | -- | 23.1 | -0.243 | -- | 30.76 | 4298 | -- | -- |
| 363.18 | 0.893 | 4.43 | -0.346 | 0.395 | -- | 1.3 | -- | -0.342 | 21.2 | -- | -- | -- | -- |
| 369.25 | 0.9 | 4.44 | -0.393 | 0.389 | -- | -- | -- | -0.344 | 21.3 | -- | -- | -- | -- |
| 372.04 | 0.898 | 4.5 | -1.2 | -- | 0.777 | -- | -- | -0.668 | -- | -242.2 | 47520 | -- | -- |
| 368.36 | 0.899 | 4.44 | -- | 0.468 | 0.69 | -- | -- | -0.382 | 22.8 | -387.1 | 47520 | -- | -- |
| 378.09 | 0.909 | 4.42 | -0.391 | -- | -- | -- | -- | -0.345 | -- | -- | -- | -- | -- |
| 373.33 | 0.904 | 4.43 | -- | 0.389 | -- | -- | -- | -0.3 | 21.3 | -- | -- | -- | -- |
| 380.18 | 0.911 | 4.42 | -- | -- | 0.361 | -- | -- | -0.343 | -- | -259.9 | 47520 | -- | -- |
| 382.13 | 0.912 | 4.41 | -- | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 311.39 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 14 |
| 6 | 312.24 | atmosphere | 1000 | 270 | < th | dose dependent | sin | 6 | NA |
| 22 | 313.06 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 27 | 313.29 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 29 | 313.38 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 45 | 313.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 9 |
| 48 | 313.58 | atmosphere | 1000 | 720 | < th | dose independent | sin | 9 | NA |
| 53 | 313.67 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 68 | 313.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 71 | 313.71 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 13 |
| 101 | 314.03 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 9 | NA |
| 102 | 314.04 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 159 | 314.62 | atmosphere | 1000 | 270 | < th | dose independent | sin | 6 | NA |
| 203 | 314.79 | atmosphere | 1000 | 270 | > th | dose independent | sin | 6 | NA |
| 218 | 314.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 243 | 315.31 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 268 | 315.49 | atmosphere | 1000 | 720 | > th | dose independent | sin | 9 | NA |
| 307 | 315.93 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 24 | 6 |
| 384 | 316.61 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 385 | 316.65 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 439 | 317.10 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 453 | 317.20 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 466 | 317.30 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 474 | 317.47 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 478 | 317.48 | atmosphere | 1000 | 10 | > th | dose independent | sin | 4 | NA |
| 495 | 317.64 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 508 | 317.73 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 525 | 317.88 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 568 | 318.03 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 16 |
| 590 | 318.18 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 780 | 319.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |