Os10g0479900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 10.
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Os10g0479900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 10.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.45 | 0.34 | 9.46 | 1.9 | 0.72 | -2.31 | -0.0889 | 0.618 | 0.382 | 5.09 | 9.92 | 85 | -- | -- |
| 52.73 | 0.338 | 9.47 | 1.82 | 0.711 | -2.27 | -0.173 | -- | 0.353 | 5 | 6.248 | 91 | -- | -- |
| 52.46 | 0.337 | 9.46 | 1.9 | 0.72 | -2.31 | -- | 0.681 | 0.385 | 5.12 | 9.78 | 85 | -- | -- |
| 52.83 | 0.339 | 9.47 | 1.81 | 0.714 | -2.3 | -- | -- | 0.358 | 5.11 | 10.08 | 88 | -- | -- |
| 70.29 | 0.39 | 9.44 | 1.97 | -- | -2.73 | -- | 0.276 | 0.497 | -- | 16.9 | 131 | -- | -- |
| 104.63 | 0.48 | 9.54 | 1.34 | 1.32 | -- | -0.0755 | -- | 0.0345 | 4.14 | -- | -- | -- | -- |
| 104.65 | 0.479 | 9.54 | 1.34 | 1.32 | -- | -- | -- | 0.0349 | 4.15 | -- | -- | -- | -- |
| 70.27 | 0.39 | 9.46 | 1.94 | -- | -2.56 | -- | -- | 0.457 | -- | 17.56 | 133 | -- | -- |
| 129.38 | 0.533 | 9.54 | -- | 1 | -1.46 | -- | -- | 0.0591 | 4.87 | 10.08 | 88 | -- | -- |
| 199.11 | 0.659 | 9.55 | 1.39 | -- | -- | -- | -- | 0.0701 | -- | -- | -- | -- | -- |
| 151.86 | 0.576 | 9.58 | -- | 1.35 | -- | -- | -- | -0.114 | 4.13 | -- | -- | -- | -- |
| 160.61 | 0.59 | 9.53 | -- | -- | -1.89 | -- | -- | 0.172 | -- | 20.12 | 128 | -- | -- |
| 250.19 | 0.738 | 9.58 | -- | -- | -- | -- | -- | -0.0843 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 9 | 52.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 10 | 52.46 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 23 | 53.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 25 | 53.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 30 | 53.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 31 | 53.91 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 35 | 54.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 36 | 54.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 39 | 54.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 40 | 54.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 41 | 54.32 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 44 | 54.41 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 46 | 54.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 53 | 54.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 57 | 54.72 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 58 | 54.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 64 | 54.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 75 | 54.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 104 | 55.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 119 | 55.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 129 | 55.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 17 |
| 136 | 55.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 139 | 55.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 143 | 55.55 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 149 | 55.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 162 | 55.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 170 | 55.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 201 | 55.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 202 | 55.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 214 | 55.75 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 228 | 55.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 244 | 55.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 291 | 55.83 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 299 | 55.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 307 | 55.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 344 | 55.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 440 | 56.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 462 | 56.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 488 | 56.10 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 490 | 56.10 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 496 | 56.11 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 497 | 56.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 557 | 56.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 582 | 56.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 618 | 56.19 | radiation | 1 | 14400 | < th | dose independent | sin | 23 | NA |
| 620 | 56.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 628 | 56.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 13 |
| 692 | 56.28 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 743 | 56.33 | temperature | 30 | 1440 | < th | dose dependent | sin | 8 | NA |
| 806 | 56.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 887 | 56.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 902 | 56.50 | radiation | 1 | 14400 | > th | dose independent | sin | 0 | NA |
| 978 | 56.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 7 |