Os10g0479100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os10g0479100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.98 | 0.566 | 12.3 | -0.65 | 2.66 | -3.47 | 0.232 | 2.18 | -0.468 | 5.95 | 1.534 | 804 | -- | -- |
| 144.69 | 0.56 | 12.3 | -0.593 | 2.72 | -3.6 | 1.51 | -- | -0.478 | 6.08 | 1.144 | 828 | -- | -- |
| 144.41 | 0.56 | 12.4 | -0.676 | 2.64 | -3.49 | -- | 2.42 | -0.481 | 6.07 | 1.448 | 820 | -- | -- |
| 151.56 | 0.573 | 12.3 | -0.613 | 2.71 | -3.63 | -- | -- | -0.467 | 6.2 | 1.02 | 837 | -- | -- |
| 163.33 | 0.595 | 12.4 | -0.63 | -- | -1.01 | -- | 1.41 | -0.496 | -- | 3.236 | 1359 | -- | -- |
| 170.54 | 0.612 | 12.4 | -0.258 | 0.299 | -- | 1.38 | -- | -0.303 | 3.4 | -- | -- | -- | -- |
| 175.83 | 0.621 | 12.4 | -0.283 | 0.315 | -- | -- | -- | -0.31 | 2.03 | -- | -- | -- | -- |
| 164.83 | 0.598 | 12.4 | -0.49 | -- | -1.11 | -- | -- | -0.457 | -- | 2.401 | 1368 | -- | -- |
| 160.18 | 0.589 | 12.3 | -- | 2.41 | -3.17 | -- | -- | -0.401 | 6.15 | 1.71 | 834 | -- | -- |
| 181.78 | 0.63 | 12.4 | -0.27 | -- | -- | -- | -- | -0.303 | -- | -- | -- | -- | -- |
| 177.94 | 0.624 | 12.4 | -- | 0.309 | -- | -- | -- | -0.279 | 2 | -- | -- | -- | -- |
| 170.51 | 0.608 | 12.4 | -- | -- | -0.964 | -- | -- | -0.415 | -- | 2.872 | 1354 | -- | -- |
| 183.71 | 0.633 | 12.4 | -- | -- | -- | -- | -- | -0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.76 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 140.66 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 16 | 18 |
| 3 | 140.76 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 17 |
| 7 | 141.16 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 27 | 142.93 | radiation | 1 | 720 | < th | dose independent | sin | 15 | NA |
| 35 | 143.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 60 | 144.40 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 16 |
| 70 | 145.10 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 75 | 145.18 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 77 | 145.21 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 79 | 145.28 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 97 | 145.47 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 99 | 145.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 105 | 145.58 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 112 | 145.67 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 122 | 145.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 123 | 145.82 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 130 | 145.88 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 141 | 145.97 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 145 | 146.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 159 | 146.09 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 19 | 10 |
| 162 | 146.09 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 166 | 146.12 | humidity | 90 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 167 | 146.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 176 | 146.19 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 22 |
| 178 | 146.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 190 | 146.27 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 199 | 146.36 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 210 | 146.39 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 213 | 146.41 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 225 | 146.53 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 10 |
| 239 | 146.65 | atmosphere | 1005 | 270 | > th | dose independent | sin | 12 | NA |
| 244 | 146.71 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 13 |
| 250 | 146.76 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 12 |
| 295 | 147.09 | atmosphere | 1005 | 30 | > th | dose independent | sin | 10 | NA |
| 307 | 147.19 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 21 | 6 |
| 355 | 147.57 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 364 | 147.60 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 21 | 19 |
| 365 | 147.61 | humidity | 90 | 720 | < th | dose dependent | sin | 12 | NA |
| 378 | 147.67 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 380 | 147.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 402 | 147.80 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 422 | 147.88 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 426 | 147.91 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 463 | 148.03 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 467 | 148.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 468 | 148.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 479 | 148.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 483 | 148.11 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 512 | 148.25 | atmosphere | 1005 | 10 | < th | dose independent | sin | 10 | NA |
| 534 | 148.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 556 | 148.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 571 | 148.46 | wind | 1 | 90 | < th | dose independent | rect. | 23 | 2 |
| 586 | 148.51 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 590 | 148.53 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 596 | 148.57 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 15 |
| 604 | 148.60 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 19 |
| 631 | 148.68 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 638 | 148.71 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 642 | 148.71 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 19 | 21 |
| 643 | 148.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 716 | 148.94 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 735 | 149.01 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 18 | 7 |
| 739 | 149.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 767 | 149.09 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 769 | 149.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 774 | 149.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 786 | 149.14 | atmosphere | 1005 | 270 | < th | dose independent | sin | 12 | NA |
| 810 | 149.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 811 | 149.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 835 | 149.27 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 19 |
| 877 | 149.36 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 886 | 149.38 | wind | 1 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 894 | 149.41 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 19 | 2 |
| 920 | 149.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 9 |
| 931 | 149.53 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 934 | 149.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 953 | 149.56 | humidity | 90 | 270 | > th | dose dependent | sin | 18 | NA |
| 960 | 149.58 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 992 | 149.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 16 |