Os10g0478600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0478600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.65 | 0.321 | 8.68 | -0.588 | 0.46 | -0.739 | 0.253 | -1.13 | 0.058 | 6.02 | 26.4 | 12 | -- | -- |
| 48.68 | 0.327 | 8.69 | -0.769 | 0.49 | -0.69 | 0.146 | -- | 0.0305 | 5.9 | 29.71 | 16 | -- | -- |
| 46.63 | 0.32 | 8.68 | -0.584 | 0.457 | -0.728 | -- | -1.1 | 0.059 | 6.07 | 26.4 | 11 | -- | -- |
| 48.72 | 0.327 | 8.69 | -0.768 | 0.491 | -0.692 | -- | -- | 0.0299 | 5.86 | 29.7 | 10 | -- | -- |
| 55.71 | 0.35 | 8.67 | -0.593 | -- | -0.817 | -- | -1.27 | 0.111 | -- | 23.1 | 4 | -- | -- |
| 55.19 | 0.348 | 8.66 | -0.609 | 0.407 | -- | 0.202 | -- | 0.166 | 7.82 | -- | -- | -- | -- |
| 55.31 | 0.348 | 8.66 | -0.604 | 0.407 | -- | -- | -- | 0.166 | 7.76 | -- | -- | -- | -- |
| 58.19 | 0.355 | 8.69 | -0.735 | -- | -0.601 | -- | -- | 0.067 | -- | 24.48 | 2 | -- | -- |
| 62.76 | 0.371 | 8.66 | -- | 0.431 | -0.378 | -- | -- | 0.169 | 6.73 | 29.7 | 10 | -- | -- |
| 64.27 | 0.375 | 8.67 | -0.599 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 64.93 | 0.377 | 8.65 | -- | 0.403 | -- | -- | -- | 0.233 | 7.86 | -- | -- | -- | -- |
| 71.33 | 0.395 | 8.67 | -- | -- | -0.355 | -- | -- | 0.176 | -- | 25.3 | 4 | -- | -- |
| 73.75 | 0.401 | 8.66 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.38 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 2 | 45.41 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 5 | 45.88 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 7 | 45.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 21 |
| 8 | 46.04 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 10 | 46.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 11 | 46.10 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 21 | 46.17 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 32 | 46.20 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 66 | 46.40 | wind | 3 | 14400 | < th | dose independent | sin | 11 | NA |
| 82 | 46.48 | wind | 3 | 14400 | > th | dose independent | sin | 11 | NA |
| 91 | 46.52 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 97 | 46.54 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 126 | 46.66 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 17 |
| 133 | 46.69 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 136 | 46.69 | wind | 5 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 146 | 46.72 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 175 | 46.79 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 184 | 46.84 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 190 | 46.86 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 191 | 46.86 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 18 |
| 233 | 46.94 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 255 | 46.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 277 | 47.02 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 278 | 47.02 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 288 | 47.03 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 293 | 47.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 323 | 47.08 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 328 | 47.08 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 333 | 47.09 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 357 | 47.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 368 | 47.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 387 | 47.14 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 388 | 47.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 410 | 47.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 413 | 47.17 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 425 | 47.18 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 440 | 47.19 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 471 | 47.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 482 | 47.26 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 493 | 47.27 | wind | 3 | 14400 | < th | dose dependent | sin | 10 | NA |
| 505 | 47.29 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 524 | 47.32 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 528 | 47.32 | wind | 3 | 14400 | < th | dose dependent | sin | 6 | NA |
| 566 | 47.36 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 607 | 47.41 | temperature | 30 | 10 | < th | dose dependent | sin | 8 | NA |
| 675 | 47.49 | wind | 1 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 706 | 47.52 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 735 | 47.54 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 753 | 47.55 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 772 | 47.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 799 | 47.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 802 | 47.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 848 | 47.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 875 | 47.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 886 | 47.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 988 | 47.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 8 |
| 992 | 47.77 | radiation | 1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 994 | 47.78 | radiation | 1 | 4320 | > th | dose independent | rect. | 5 | 1 |