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Os10g0478300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Y19 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.94 (0.031) R2 : 0.64
β1 : -0.935 (0.115) R2dD : 0.058 R2D : 0.0228
β2 : 1.58 (0.103) R2dC : 0.388 R2C : -0.469
β3 : -3.5 (0.143) R2dE : 0.957 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.01 (0.345) R2dD*E : 0.0573 R2D*E : 0.0698
γ1 : 0.217 (0.0662) R2dN8 : 0.0109 R2N8 : 0.0282
σ : 0.576
deviance : 152.81
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C
peak time of C : 23.3
E
wheather : temperature
threshold : 34.52
memory length : 220
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 15.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.11 0.581 6.94 -0.923 1.5 -3.57 0.694 2.22 0.19 23.4 33.7 240 16 15.2
155.86 0.581 6.93 -0.694 1.83 -3.86 2.03 -- 0.281 23.8 37 268 15.8 15.1
152.81 0.576 6.94 -0.935 1.58 -3.5 -- 3.01 0.217 23.3 34.52 220 16 15.1
173.72 0.614 6.92 -0.804 2.37 -4.61 -- -- 0.251 0.489 37.31 288 16 14.5
209.43 0.674 6.92 -0.944 -- -2.63 -- 2.74 0.171 -- 30.14 255 16.6 15.4
262.94 0.76 6.86 -0.445 1.54 -- -1.94 -- 0.468 16.4 -- -- -- --
271.01 0.771 6.87 -0.463 1.56 -- -- -- 0.457 16.9 -- -- -- --
221.47 0.693 6.95 -0.876 -- -3.27 -- -- 0.0619 -- 28.58 343 15.7 15.2
190.65 0.643 6.91 -- 2.33 -4.4 -- -- 0.344 0.338 38.77 283 16 14.5
398.72 0.933 6.85 -0.521 -- -- -- -- 0.417 -- -- -- -- --
276.67 0.778 6.86 -- 1.56 -- -- -- 0.509 16.9 -- -- -- --
239.91 0.721 6.9 -- -- -2.88 -- -- 0.223 -- 29.32 330 16 15
405.87 0.94 6.84 -- -- -- -- -- 0.475 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.93 temperature 30 270 < th dose dependent rect. 16 15
56 180.71 temperature 15 270 > th dose dependent rect. 19 8
94 185.10 temperature 20 10 > th dose independent rect. 22 7
99 185.25 temperature 15 10 > th dose dependent rect. 22 7
111 186.64 temperature 25 270 < th dose independent rect. 16 15
165 189.62 temperature 20 270 > th dose independent rect. 20 7
213 191.84 temperature 30 270 < th dose dependent sin 12 NA
258 193.99 temperature 30 720 < th dose dependent rect. 17 5
260 194.13 temperature 30 720 < th dose dependent rect. 19 2
309 195.79 temperature 10 270 > th dose dependent sin 13 NA
378 198.44 temperature 10 720 > th dose dependent rect. 15 8
437 200.35 temperature 20 270 > th dose independent rect. 9 17
448 200.59 temperature 20 90 > th dose independent rect. 11 17
512 202.12 temperature 25 720 < th dose independent rect. 15 9
517 202.28 temperature 25 720 > th dose independent rect. 15 4
555 203.04 temperature 25 720 < th dose independent rect. 16 6
654 204.98 temperature 25 270 < th dose independent rect. 8 5
655 204.99 temperature 15 720 > th dose dependent rect. 15 4
670 205.23 temperature 10 270 > th dose dependent rect. 8 18
672 205.24 temperature 20 10 > th dose independent rect. 18 11
673 205.26 temperature 25 720 > th dose independent rect. 13 13
760 206.50 temperature 25 270 < th dose independent rect. 9 2
782 206.89 temperature 20 270 > th dose independent sin 14 NA
848 207.63 temperature 20 10 > th dose independent rect. 15 14
863 207.90 humidity 50 270 > th dose independent rect. 16 15
960 208.87 temperature 25 270 < th dose independent sin 13 NA
963 208.91 temperature 25 720 > th dose independent sin 17 NA
981 209.13 radiation 30 270 < th dose dependent rect. 16 15
985 209.18 radiation 30 270 < th dose dependent rect. 15 17