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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0478100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein DnaJ, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.5 (0.051) R2 : 0.686
β1 : -2.22 (0.274) R2dD : 0.211 R2D : -0.191
β2 : 2.47 (0.0916) R2dC : 0.501 R2C : 0.43
β3 : 4.29 (0.369) R2dE : 0.928 R2E : -1.23
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.5 (0.734) R2dD*E : 0.772 R2D*E : -0.183
γ1 : -0.774 (0.107) R2dN8 : 0.0981 R2N8 : -0.112
σ : 0.658
deviance : 199.55
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_____
C
peak time of C : 18.6
E
wheather : wind
threshold : 6.976
memory length : 47520
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.35
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.67 0.654 5.64 -1.92 2.56 3.62 2.42 8.6 -0.697 18.8 7.415 43169 9.63 --
271.85 0.768 6.02 -1.44 2.45 1.13 2.53 -- -0.841 18.7 6.201 47520 10.8 --
199.55 0.658 5.5 -2.22 2.47 4.29 -- 10.5 -0.774 18.6 6.976 47520 7.35 --
265.72 0.759 6.04 -1.88 2.48 1.42 -- -- -0.929 18.8 9 47520 11.3 --
516.17 1.06 5.45 -2.36 -- 4.42 -- 10.6 -0.857 -- 6.914 47520 7.08 --
279.46 0.784 5.95 -0.466 2.45 -- 2.02 -- -0.539 18.8 -- -- -- --
289.72 0.797 5.95 -0.498 2.46 -- -- -- -0.533 18.7 -- -- -- --
288.26 0.794 5.89 -0.54 -- 2.47 -- -- -0.548 -- 9 47520 11.3 --
287.44 0.79 5.91 -- 2.5 -0.436 -- -- -0.394 18.7 12.3 47520 11.2 --
606.06 1.15 5.9 -0.555 -- -- -- -- -0.582 -- -- -- -- --
296.26 0.805 5.94 -- 2.47 -- -- -- -0.477 18.7 -- -- -- --
295.95 0.804 5.88 -- -- 2.47 -- -- -0.488 -- 9 47520 11.3 --
614.19 1.16 5.88 -- -- -- -- -- -0.52 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.88 wind 9 14400 > th dose independent rect. 18 10
2 177.13 wind 9 14400 > th dose independent rect. 18 6
3 177.14 wind 9 14400 > th dose independent rect. 18 8
5 177.15 wind 9 14400 > th dose dependent rect. 18 10
10 177.47 wind 9 14400 > th dose dependent rect. 18 8
13 177.51 wind 9 14400 > th dose dependent rect. 18 6
21 177.66 wind 9 14400 < th dose independent rect. 18 10
23 177.71 wind 9 14400 < th dose independent rect. 20 8
28 177.97 wind 9 14400 < th dose independent rect. 18 4
48 178.45 wind 9 14400 > th dose dependent rect. 18 18
64 179.04 wind 9 14400 > th dose dependent sin 11 NA
78 180.09 wind 9 14400 > th dose independent rect. 18 17
118 181.90 wind 9 14400 < th dose independent rect. 18 17
134 182.93 wind 9 14400 > th dose dependent rect. 15 20
149 183.44 wind 9 14400 > th dose independent sin 11 NA
150 183.47 wind 9 14400 < th dose independent sin 11 NA
180 184.26 wind 9 43200 < th dose independent rect. 14 19
184 184.52 wind 9 43200 > th dose independent rect. 14 19
209 185.24 wind 5 14400 > th dose dependent rect. 21 1
211 185.26 wind 9 43200 < th dose independent rect. 14 6
240 186.04 wind 9 43200 > th dose independent rect. 14 6
308 187.92 wind 9 43200 > th dose dependent rect. 14 6
376 189.64 wind 7 43200 > th dose dependent rect. 22 22
388 189.74 wind 7 43200 > th dose dependent rect. 2 18
390 189.76 wind 9 43200 > th dose independent rect. 16 22
393 189.81 wind 9 43200 < th dose independent rect. 14 11
438 190.35 wind 9 43200 > th dose independent rect. 14 11
446 190.45 wind 9 43200 > th dose dependent sin 19 NA
447 190.45 wind 7 43200 > th dose dependent rect. 2 22
454 190.50 wind 7 43200 > th dose dependent no NA NA
481 190.71 wind 7 43200 > th dose dependent rect. 7 23
552 191.39 wind 9 43200 > th dose independent rect. 23 22
553 191.39 wind 9 43200 > th dose dependent rect. 9 12
586 191.63 wind 9 43200 > th dose independent rect. 2 23
593 191.68 wind 9 43200 > th dose independent no NA NA
605 191.73 wind 9 43200 > th dose independent rect. 2 19
610 191.75 wind 7 43200 < th dose independent rect. 22 22
619 191.79 wind 7 43200 > th dose dependent rect. 18 23
632 191.84 wind 9 43200 > th dose independent rect. 20 23
652 191.92 wind 9 43200 > th dose independent rect. 6 23
657 191.95 wind 9 43200 < th dose independent rect. 16 23
689 192.16 wind 9 43200 < th dose independent rect. 2 19
715 192.27 wind 7 43200 < th dose independent rect. 17 1
717 192.28 wind 9 43200 < th dose independent rect. 2 23
731 192.34 wind 9 43200 < th dose independent no NA NA
750 192.41 wind 9 43200 < th dose independent rect. 20 23
793 192.60 wind 9 43200 < th dose independent rect. 6 23
814 192.70 wind 7 43200 > th dose dependent rect. 17 1
819 192.73 wind 9 43200 < th dose independent rect. 8 23
893 193.05 wind 7 43200 > th dose independent rect. 17 1