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Os10g0476900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0206) R2 : 0.799
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.09 (0.0499) R2dC : 0.774 R2C : 0.773
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.289 (0.0434) R2dN8 : 0.0253 R2N8 : 0.0243
σ : 0.389
deviance : 69.21
__
_____
C
peak time of C : 13.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.49 0.324 11.3 0.861 2.08 -0.968 -0.723 1.12 0.00284 13.9 15.96 1952 -- --
48.33 0.324 11.3 0.628 1.99 -0.918 -0.687 -- -0.0831 13.7 10.93 2677 -- --
49.44 0.327 11.3 0.898 2.05 -0.934 -- 1.28 0.011 13.9 16.56 2080 -- --
50.49 0.331 11.4 0.607 2 -0.926 -- -- -0.0725 13.7 11.18 2677 -- --
266.12 0.76 11.3 1.21 -- -1.83 -- 2.1 0.126 -- 17.21 1012 -- --
65.63 0.38 11.4 0.262 2.09 -- -0.725 -- -0.258 13.7 -- -- -- --
67.71 0.385 11.4 0.239 2.09 -- -- -- -0.262 13.7 -- -- -- --
266.89 0.761 11.3 0.735 -- -1.94 -- -- 0.0359 -- 15.64 1036 -- --
58.04 0.355 11.4 -- 2.08 -0.752 -- -- -0.175 13.8 9.524 1903 -- --
334.54 0.855 11.4 0.154 -- -- -- -- -0.309 -- -- -- -- --
69.21 0.389 11.4 -- 2.09 -- -- -- -0.289 13.7 -- -- -- --
268.78 0.766 11.5 -- -- 1.6 -- -- -0.504 -- 23.4 2538 -- --
335.17 0.855 11.4 -- -- -- -- -- -0.326 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.11 temperature 20.0 270 > th dose independent rect. 1 19
2 39.32 temperature 10.0 270 > th dose dependent rect. 16 14
4 39.81 temperature 20.0 270 > th dose independent rect. 1 5
8 40.41 temperature 20.0 90 > th dose independent rect. 17 14
17 40.92 temperature 10.0 270 > th dose dependent rect. 24 21
19 41.00 temperature 15.0 270 > th dose dependent rect. 1 5
20 41.26 temperature 10.0 270 > th dose dependent rect. 1 19
23 41.43 radiation 10.0 90 < th dose independent rect. 3 19
45 42.23 temperature 30.0 90 < th dose dependent rect. 21 6
62 42.88 temperature 10.0 720 > th dose dependent rect. 18 10
63 42.89 temperature 10.0 10 > th dose dependent rect. 3 19
64 42.93 temperature 30.0 720 < th dose dependent rect. 21 4
71 43.01 temperature 10.0 90 > th dose dependent rect. 3 19
78 43.08 radiation 20.0 90 < th dose dependent rect. 3 19
81 43.16 temperature 30.0 270 < th dose dependent rect. 19 15
108 43.61 radiation 10.0 270 < th dose dependent rect. 1 18
123 43.80 radiation 40.0 270 < th dose independent rect. 15 14
125 43.83 temperature 15.0 270 > th dose dependent rect. 3 1
139 44.01 temperature 10.0 270 > th dose independent rect. 5 10
140 44.01 atmosphere 1015.0 270 < th dose independent rect. 5 10
141 44.01 temperature 10.0 270 > th dose independent rect. 15 14
144 44.04 precipitation 0.1 270 < th dose independent rect. 5 10
145 44.04 precipitation 0.1 270 < th dose dependent rect. 5 10
151 44.09 temperature 10.0 720 > th dose dependent rect. 17 19
164 44.23 wind 9.0 270 < th dose independent rect. 5 10
166 44.25 atmosphere 995.0 270 > th dose independent rect. 5 10
167 44.25 temperature 30.0 10 < th dose dependent rect. 22 5
211 44.63 atmosphere 1015.0 270 < th dose independent rect. 24 21
220 44.73 wind 9.0 270 < th dose independent rect. 20 5
226 44.75 temperature 10.0 270 > th dose independent rect. 20 5
227 44.75 temperature 30.0 270 < th dose independent rect. 20 5
228 44.75 humidity 50.0 270 > th dose independent rect. 20 5
231 44.75 atmosphere 995.0 270 > th dose independent rect. 20 5
232 44.75 radiation 1.0 270 < th dose independent rect. 20 5
237 44.75 temperature 10.0 270 > th dose independent rect. 1 19
238 44.75 atmosphere 1015.0 270 < th dose independent rect. 1 19
240 44.75 radiation 1.0 270 < th dose dependent rect. 20 5
264 44.85 wind 1.0 270 > th dose independent rect. 20 5
271 44.90 precipitation 0.1 270 < th dose independent rect. 19 6
272 44.90 precipitation 0.1 270 < th dose dependent rect. 19 6
277 44.92 temperature 30.0 270 < th dose dependent rect. 5 21
279 44.95 wind 9.0 270 < th dose independent rect. 15 14
282 44.98 wind 7.0 270 < th dose independent rect. 21 3
286 45.01 temperature 10.0 270 > th dose independent rect. 21 3
287 45.01 temperature 30.0 270 < th dose independent rect. 21 3
288 45.01 humidity 50.0 270 > th dose independent rect. 21 3
291 45.01 atmosphere 995.0 270 > th dose independent rect. 21 3
292 45.01 radiation 1.0 270 < th dose independent rect. 21 3
297 45.01 temperature 10.0 270 > th dose independent rect. 24 21
298 45.01 radiation 1.0 270 < th dose dependent rect. 21 3
331 45.07 atmosphere 995.0 270 > th dose dependent rect. 21 3
344 45.11 atmosphere 995.0 270 > th dose dependent rect. 20 5
347 45.13 radiation 20.0 90 < th dose independent rect. 17 14
348 45.14 temperature 20.0 270 > th dose independent rect. 11 20
350 45.15 precipitation 0.1 270 < th dose independent rect. 21 3
351 45.15 precipitation 0.1 270 < th dose dependent rect. 21 3
352 45.16 temperature 30.0 90 < th dose dependent rect. 7 20
368 45.22 radiation 40.0 90 < th dose dependent rect. 16 15
369 45.23 radiation 10.0 270 < th dose independent rect. 1 6
384 45.30 wind 1.0 270 > th dose independent rect. 21 3
396 45.38 wind 1.0 90 > th dose independent rect. 7 10
402 45.40 wind 9.0 270 < th dose independent rect. 1 19
410 45.44 temperature 20.0 10 > th dose independent rect. 3 4
422 45.50 temperature 30.0 270 < th dose dependent rect. 19 18
484 45.71 precipitation 0.1 270 < th dose independent rect. 1 18
487 45.71 precipitation 0.1 270 < th dose dependent rect. 1 18
494 45.76 temperature 15.0 10 > th dose dependent rect. 3 4
502 45.78 radiation 10.0 270 < th dose dependent rect. 1 6
505 45.80 atmosphere 995.0 90 > th dose independent rect. 17 14
533 45.90 wind 9.0 270 < th dose independent rect. 24 21
553 45.96 wind 9.0 90 < th dose independent rect. 17 14
559 45.97 temperature 30.0 720 < th dose dependent rect. 15 17
564 45.99 atmosphere 1015.0 90 < th dose independent rect. 17 14
581 46.01 temperature 10.0 90 > th dose independent rect. 3 18
582 46.01 atmosphere 1015.0 90 < th dose independent rect. 3 18
583 46.01 humidity 50.0 270 > th dose dependent rect. 1 5
613 46.08 atmosphere 995.0 270 > th dose independent rect. 1 19
615 46.10 precipitation 0.1 270 < th dose independent rect. 6 19
618 46.10 precipitation 0.1 270 < th dose dependent rect. 6 19
619 46.11 wind 1.0 270 > th dose independent rect. 5 10
623 46.12 temperature 30.0 720 < th dose dependent sin 12 NA
636 46.16 atmosphere 995.0 10 > th dose dependent rect. 22 5
641 46.18 radiation 10.0 90 < th dose independent rect. 3 7
642 46.18 temperature 15.0 720 > th dose dependent sin 12 NA
661 46.24 radiation 10.0 10 < th dose independent rect. 3 7
662 46.24 wind 9.0 270 < th dose independent rect. 6 19
682 46.28 atmosphere 1010.0 270 < th dose independent rect. 1 5
691 46.30 humidity 80.0 90 > th dose independent rect. 3 4
692 46.30 humidity 50.0 90 > th dose independent rect. 17 14
693 46.30 precipitation 0.1 270 < th dose independent rect. 24 21
694 46.30 precipitation 0.1 270 < th dose dependent rect. 24 21
707 46.36 atmosphere 1015.0 270 < th dose independent rect. 15 15
730 46.40 precipitation 0.1 270 < th dose independent rect. 5 21
736 46.40 precipitation 0.1 270 < th dose dependent rect. 5 21
737 46.41 radiation 20.0 90 < th dose independent rect. 3 4
746 46.42 temperature 30.0 270 < th dose independent rect. 20 14
758 46.45 wind 9.0 90 < th dose independent rect. 3 18
764 46.47 humidity 80.0 270 > th dose independent rect. 1 5
768 46.48 wind 1.0 90 > th dose independent rect. 7 20
775 46.50 wind 9.0 270 < th dose independent rect. 1 5
776 46.50 temperature 10.0 270 > th dose independent rect. 1 5
778 46.50 temperature 30.0 270 < th dose independent rect. 1 5
779 46.50 humidity 50.0 270 > th dose independent rect. 1 5
782 46.50 atmosphere 995.0 270 > th dose independent rect. 1 5
787 46.50 temperature 10.0 270 > th dose independent rect. 6 19
792 46.51 precipitation 0.1 270 < th dose independent rect. 15 14
797 46.51 precipitation 0.1 270 < th dose dependent rect. 15 14
801 46.52 humidity 50.0 270 > th dose dependent rect. 2 3
806 46.53 wind 9.0 270 < th dose dependent rect. 21 3
817 46.57 wind 9.0 270 < th dose independent rect. 5 21
841 46.65 radiation 10.0 90 < th dose independent rect. 3 10
849 46.67 radiation 1.0 90 > th dose independent rect. 7 10
867 46.73 radiation 1.0 270 < th dose independent rect. 2 3
873 46.73 radiation 10.0 270 < th dose dependent rect. 2 3
875 46.74 precipitation 0.1 270 < th dose independent rect. 1 5
878 46.74 precipitation 0.1 270 < th dose dependent rect. 1 5
890 46.76 wind 9.0 90 < th dose independent rect. 3 4
891 46.76 temperature 10.0 90 > th dose independent rect. 3 4
893 46.76 temperature 30.0 90 < th dose independent rect. 3 4
894 46.76 humidity 50.0 90 > th dose independent rect. 3 4
896 46.76 atmosphere 995.0 90 > th dose independent rect. 3 4
897 46.76 atmosphere 1015.0 90 < th dose independent rect. 3 4
909 46.77 humidity 50.0 270 > th dose independent rect. 1 18
918 46.78 humidity 60.0 270 > th dose dependent rect. 3 1
927 46.80 wind 7.0 10 < th dose independent rect. 22 5
949 46.83 temperature 10.0 10 > th dose independent rect. 22 5
950 46.83 temperature 30.0 10 < th dose independent rect. 22 5
951 46.83 humidity 50.0 10 > th dose independent rect. 22 5
954 46.83 atmosphere 995.0 10 > th dose independent rect. 22 5
955 46.83 radiation 1.0 10 < th dose independent rect. 22 5
960 46.83 temperature 10.0 10 > th dose independent rect. 3 19
962 46.83 atmosphere 1015.0 10 < th dose independent rect. 3 19
964 46.83 radiation 1.0 10 < th dose dependent rect. 22 5
988 46.84 temperature 10.0 270 > th dose independent rect. 5 21
995 46.85 radiation 1.0 14400 > th dose independent rect. 18 13