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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0476100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.1 (0.0361) R2 : 0.00873
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.152 (0.076) R2dN8 : 0.0113 R2N8 : 0.00873
σ : 0.679
deviance : 211.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.06 0.609 4.16 -0.728 0.297 4.41 -0.413 -36 -0.159 23.7 24.84 11 5.08 0.867
183.19 0.63 4.12 -0.318 0.246 2.28 -0.848 -- -0.168 22.2 24.6 89 5.47 0.0496
168.65 0.605 4.16 -0.709 0.289 4.43 -- -35.9 -0.163 24 24.82 12 5.09 0.817
182.58 0.629 4.12 -0.231 0.307 2.95 -- -- -0.143 22.4 24.59 85 5.47 0.0596
174.37 0.615 4.16 -0.696 -- 4.44 -- -36.3 -0.16 -- 24.81 12 5.1 0.8
204.07 0.67 4.11 -0.228 0.317 -- -0.282 -- -0.182 0.798 -- -- -- --
204.34 0.669 4.11 -0.219 0.322 -- -- -- -0.182 1.25 -- -- -- --
187.41 0.638 4.1 -0.233 -- 3.05 -- -- -0.142 -- 24.6 88 5.46 0.0502
183.38 0.631 4.1 -- 0.296 3.14 -- -- -0.122 23.9 24.57 66 5.48 0.0775
210.73 0.678 4.11 -0.206 -- -- -- -- -0.175 -- -- -- -- --
205.6 0.671 4.11 -- 0.318 -- -- -- -0.157 1.22 -- -- -- --
188.84 0.64 4.09 -- -- 3.03 -- -- -0.116 -- 24.55 67 5.46 0.0541
211.86 0.679 4.1 -- -- -- -- -- -0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.06 temperature 25 10 > th dose independent rect. 5 1
2 189.83 radiation 30 270 > th dose dependent rect. 15 17
3 190.35 radiation 30 270 > th dose dependent rect. 15 1
21 191.40 radiation 30 270 > th dose independent rect. 15 17
53 191.86 radiation 30 720 < th dose independent rect. 15 8
54 191.87 wind 3 1440 < th dose independent rect. 13 1
70 192.00 radiation 30 270 > th dose independent rect. 15 1
101 192.15 wind 3 1440 > th dose independent rect. 13 1
105 192.39 temperature 10 43200 > th dose independent rect. 11 9
123 192.99 radiation 40 1440 < th dose independent rect. 15 1
125 193.11 wind 9 720 > th dose dependent rect. 18 1
126 193.11 wind 5 1440 < th dose dependent rect. 13 1
128 193.16 humidity 80 43200 > th dose dependent rect. 7 2
130 193.21 radiation 40 720 > th dose dependent rect. 14 19
135 193.30 temperature 10 43200 > th dose independent rect. 16 4
139 193.42 wind 3 1440 > th dose independent rect. 12 4
161 193.53 atmosphere 995 43200 > th dose independent sin 20 NA
181 193.61 atmosphere 995 43200 < th dose independent rect. 13 9
183 193.64 atmosphere 995 43200 > th dose independent rect. 13 9
185 193.68 wind 3 1440 < th dose independent rect. 12 4
187 193.69 atmosphere 995 43200 > th dose independent rect. 4 15
191 193.71 atmosphere 995 43200 < th dose independent sin 20 NA
193 193.75 atmosphere 995 43200 > th dose independent rect. 9 14
202 193.78 atmosphere 995 43200 > th dose independent rect. 11 12
232 193.84 atmosphere 995 43200 < th dose independent rect. 11 12
238 193.87 atmosphere 995 43200 < th dose independent rect. 3 16
244 193.89 atmosphere 1000 43200 < th dose dependent rect. 9 1
257 193.95 atmosphere 995 43200 < th dose independent rect. 9 14
260 193.95 atmosphere 995 43200 < th dose independent rect. 7 17
271 193.98 radiation 40 1440 < th dose independent rect. 15 16
272 193.99 wind 1 1440 > th dose dependent rect. 13 2
275 194.00 wind 9 43200 < th dose independent rect. 23 4
285 194.03 radiation 40 1440 < th dose independent rect. 15 18
302 194.10 atmosphere 1000 43200 < th dose dependent rect. 8 4
305 194.12 atmosphere 995 43200 > th dose independent sin 1 NA
308 194.12 wind 1 1440 < th dose dependent rect. 15 1
357 194.27 radiation 1 14400 < th dose independent rect. 19 11
359 194.27 atmosphere 1000 43200 < th dose dependent rect. 11 1
362 194.28 radiation 1 14400 < th dose independent rect. 3 3
370 194.29 atmosphere 995 43200 > th dose independent rect. 13 6
372 194.29 radiation 30 720 < th dose dependent rect. 15 9
375 194.30 radiation 1 14400 < th dose independent rect. 23 7
378 194.30 radiation 40 4320 < th dose independent rect. 15 9
386 194.32 atmosphere 995 43200 < th dose independent sin 1 NA
395 194.33 wind 9 43200 > th dose independent rect. 23 4
396 194.33 atmosphere 995 43200 < th dose independent rect. 13 6
412 194.34 radiation 40 720 > th dose independent rect. 14 19
432 194.40 wind 9 43200 > th dose dependent rect. 15 18
433 194.41 wind 5 43200 > th dose independent rect. 8 1
454 194.42 radiation 1 14400 > th dose independent rect. 4 2
470 194.44 wind 5 43200 < th dose independent rect. 8 1
472 194.45 radiation 30 270 < th dose independent sin 13 NA
476 194.46 wind 7 43200 > th dose independent rect. 2 1
496 194.48 humidity 80 43200 < th dose independent rect. 9 2
508 194.51 wind 7 43200 > th dose dependent rect. 2 1
512 194.53 wind 7 43200 < th dose independent rect. 2 1
516 194.53 atmosphere 995 43200 > th dose independent rect. 9 10
519 194.53 wind 9 43200 > th dose independent rect. 16 18
532 194.55 wind 9 43200 < th dose independent rect. 16 18
533 194.55 wind 9 43200 > th dose dependent rect. 12 22
534 194.56 wind 9 43200 > th dose dependent rect. 15 23
535 194.57 atmosphere 995 43200 < th dose independent rect. 14 3
554 194.61 humidity 90 43200 < th dose independent rect. 6 2
585 194.68 atmosphere 995 43200 > th dose independent rect. 6 3
593 194.69 atmosphere 995 43200 < th dose independent rect. 8 11
611 194.70 atmosphere 995 43200 < th dose dependent rect. 15 2
614 194.71 wind 5 43200 > th dose dependent rect. 8 1
620 194.72 wind 7 43200 > th dose dependent rect. 23 1
622 194.72 atmosphere 995 43200 < th dose dependent rect. 4 6
629 194.73 wind 9 43200 > th dose dependent rect. 21 22
646 194.76 wind 9 43200 > th dose dependent rect. 23 20
662 194.77 wind 7 43200 > th dose dependent rect. 21 13
667 194.77 wind 9 43200 > th dose dependent rect. 1 18
677 194.78 wind 9 43200 > th dose dependent rect. 23 4
683 194.79 wind 9 43200 > th dose independent sin 10 NA
684 194.79 wind 9 720 > th dose independent rect. 18 1
688 194.79 radiation 20 720 < th dose independent rect. 13 20
692 194.79 wind 9 43200 > th dose dependent rect. 4 15
699 194.80 humidity 80 43200 > th dose independent rect. 9 2
701 194.80 radiation 30 4320 > th dose dependent rect. 7 1
716 194.80 wind 9 43200 > th dose dependent rect. 6 13
726 194.81 humidity 80 14400 > th dose dependent rect. 22 1
737 194.82 wind 9 43200 > th dose independent rect. 21 11
741 194.82 atmosphere 995 43200 < th dose dependent rect. 5 3
756 194.83 wind 9 43200 > th dose dependent rect. 1 23
760 194.84 wind 9 43200 < th dose independent rect. 21 11
762 194.84 radiation 20 720 < th dose independent rect. 14 18
763 194.84 wind 9 43200 > th dose dependent no NA NA
780 194.84 wind 9 43200 > th dose dependent rect. 6 23
795 194.85 wind 7 43200 > th dose dependent rect. 18 16
802 194.85 wind 9 43200 > th dose dependent rect. 6 21
811 194.85 wind 9 43200 > th dose dependent rect. 18 23
813 194.86 wind 9 43200 < th dose independent sin 10 NA
815 194.86 atmosphere 995 43200 > th dose independent rect. 7 1
841 194.87 atmosphere 995 43200 < th dose independent rect. 5 5
844 194.87 wind 9 43200 < th dose independent rect. 20 14
864 194.88 atmosphere 1015 14400 < th dose independent rect. 16 2
926 194.91 wind 9 43200 > th dose dependent sin 0 NA
949 194.92 radiation 40 4320 < th dose independent rect. 21 11
954 194.92 wind 9 43200 > th dose dependent sin 12 NA
956 194.92 wind 1 43200 < th dose dependent rect. 13 2
958 194.92 wind 9 43200 > th dose dependent rect. 21 17
972 194.93 atmosphere 995 43200 < th dose dependent rect. 14 8
974 194.93 atmosphere 995 43200 < th dose dependent rect. 2 17
991 194.94 humidity 50 14400 > th dose dependent rect. 22 1