FiT-DB / Search/ Help/ Sample detail

Os10g0473400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF608 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.26 (0.0237) R2 : 0.858
β1 : -0.749 (0.0867) R2dD : 0.0262 R2D : 0.0186
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.88 (0.0557) R2dE : 0.834 R2E : 0.828
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.188 (0.0505) R2dN8 : 0.00784 R2N8 : 0.00157
σ : 0.443
deviance : 90.38
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.22
memory length : 335
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.75
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.24 0.385 9.32 -0.836 2.21 1.52 -2.06 1.83 -0.268 2.99 0.207 133 20.8 --
70.57 0.391 9.32 -0.861 2.12 1.54 -1.32 -- -0.267 2.96 0.2198 137 21.5 --
76.3 0.407 9.32 -0.796 2.1 1.5 -- -0.387 -0.253 2.86 0.2163 150 21.9 --
76.44 0.407 9.32 -0.787 2.11 1.52 -- -- -0.257 2.88 0.2102 146 21.7 --
105.36 0.478 9.29 -0.854 -- 2.67 -- -1.77 -0.275 -- 3.55 266 3.86 --
107.72 0.487 9.32 -0.888 3.01 -- -1.04 -- -0.32 3.31 -- -- -- --
111.2 0.494 9.32 -0.868 3 -- -- -- -0.314 3.31 -- -- -- --
90.38 0.443 9.26 -0.749 -- 2.88 -- -- -0.188 -- 0.22 335 3.75 --
94.38 0.452 9.33 -- 2.13 1.53 -- -- -0.223 2.9 0.21 150 21.3 --
619.63 1.16 9.32 -0.74 -- -- -- -- -0.234 -- -- -- -- --
131.03 0.535 9.3 -- 2.98 -- -- -- -0.217 3.31 -- -- -- --
106.11 0.48 9.33 -- -- 2.89 -- -- -0.222 -- 0.21 319 3.45 --
634.09 1.18 9.3 -- -- -- -- -- -0.152 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.46 wind 5.0 10 < th dose independent rect. 2 4
4 64.74 precipitation 0.1 10 < th dose independent rect. 6 20
5 64.74 precipitation 0.1 10 < th dose dependent rect. 6 20
9 65.16 wind 5.0 270 < th dose independent rect. 1 2
10 65.18 precipitation 0.1 10 < th dose independent rect. 2 4
11 65.18 precipitation 0.1 10 < th dose dependent rect. 2 4
13 65.26 temperature 10.0 10 > th dose independent rect. 2 4
15 65.26 temperature 30.0 10 < th dose independent rect. 2 4
16 65.26 humidity 50.0 10 > th dose independent rect. 2 4
19 65.26 atmosphere 995.0 10 > th dose independent rect. 2 4
20 65.26 atmosphere 1010.0 10 < th dose independent rect. 2 4
22 65.26 radiation 20.0 10 < th dose independent rect. 2 4
25 65.26 temperature 10.0 10 > th dose independent rect. 6 20
31 65.43 wind 9.0 10 < th dose independent rect. 6 20
32 65.56 radiation 40.0 10 < th dose dependent rect. 2 4
54 66.13 wind 9.0 1440 < th dose independent rect. 3 4
55 66.13 temperature 10.0 1440 > th dose independent rect. 3 4
58 66.13 temperature 30.0 1440 < th dose independent rect. 3 4
62 66.13 humidity 50.0 1440 > th dose independent rect. 3 4
67 66.13 atmosphere 995.0 1440 > th dose independent rect. 3 4
68 66.13 radiation 40.0 1440 < th dose independent rect. 3 4
72 66.13 temperature 10.0 1440 > th dose independent rect. 7 20
76 66.19 wind 9.0 10 < th dose dependent rect. 2 4
92 66.87 precipitation 0.1 270 < th dose independent rect. 1 2
93 66.87 precipitation 0.1 270 < th dose dependent rect. 1 2
97 66.90 precipitation 0.1 270 < th dose independent rect. 4 21
99 66.90 precipitation 0.1 270 < th dose dependent rect. 4 21
101 66.91 temperature 10.0 10 > th dose dependent rect. 6 20
102 66.92 temperature 10.0 270 > th dose independent rect. 1 2
104 66.92 temperature 30.0 270 < th dose independent rect. 1 2
105 66.92 humidity 50.0 270 > th dose independent rect. 1 2
108 66.92 atmosphere 995.0 270 > th dose independent rect. 1 2
109 66.92 atmosphere 1010.0 270 < th dose independent rect. 1 2
111 66.92 radiation 1.0 270 < th dose independent rect. 1 2
116 66.92 temperature 10.0 270 > th dose independent rect. 3 22
117 66.92 radiation 1.0 270 < th dose dependent rect. 1 2
144 67.14 wind 1.0 270 > th dose independent rect. 1 2
196 67.55 humidity 50.0 10 > th dose dependent rect. 2 4
201 67.63 wind 9.0 270 < th dose independent rect. 3 22
234 68.07 atmosphere 995.0 10 > th dose independent rect. 6 20
253 68.31 atmosphere 1015.0 1440 < th dose independent rect. 3 4
259 68.45 atmosphere 995.0 10 > th dose dependent rect. 2 4
268 68.65 temperature 30.0 10 < th dose dependent rect. 2 4
278 69.01 temperature 30.0 270 < th dose dependent rect. 1 2
301 69.59 temperature 10.0 10 > th dose dependent rect. 2 4
304 69.62 humidity 50.0 270 > th dose dependent rect. 1 2
333 70.05 radiation 1.0 270 < th dose dependent rect. 24 11
353 70.14 humidity 50.0 10 > th dose independent rect. 6 20
354 70.14 atmosphere 1015.0 10 < th dose independent rect. 6 20
438 70.82 temperature 30.0 90 < th dose dependent rect. 3 2
445 70.89 radiation 1.0 90 < th dose dependent rect. 2 9
457 71.14 radiation 1.0 90 < th dose independent rect. 2 9
497 71.38 temperature 10.0 10 > th dose dependent rect. 6 8
546 71.58 temperature 20.0 10 > th dose independent rect. 6 8
560 71.77 atmosphere 995.0 270 > th dose dependent rect. 1 2
609 72.15 radiation 40.0 10 < th dose dependent rect. 14 16
625 72.25 temperature 10.0 270 > th dose dependent rect. 1 2
672 72.49 wind 9.0 90 < th dose dependent rect. 6 20
675 72.53 radiation 1.0 270 < th dose independent rect. 24 11
749 72.86 wind 9.0 10 < th dose independent rect. 6 8
750 72.88 atmosphere 995.0 270 > th dose independent rect. 4 21
756 72.91 atmosphere 1015.0 10 < th dose dependent rect. 2 4
798 73.30 wind 9.0 10 < th dose independent rect. 14 16
842 73.49 temperature 10.0 10 > th dose independent rect. 6 8
844 73.49 atmosphere 995.0 10 > th dose independent rect. 6 8
845 73.49 atmosphere 1015.0 10 < th dose independent rect. 6 8
846 73.49 temperature 10.0 10 > th dose independent rect. 14 16
849 73.54 radiation 1.0 90 < th dose dependent sin 3 NA
851 73.56 radiation 1.0 270 < th dose dependent rect. 23 20
858 73.61 precipitation 0.1 10 < th dose independent rect. 6 8
861 73.61 precipitation 0.1 10 < th dose dependent rect. 6 8
862 73.62 radiation 40.0 10 < th dose independent rect. 14 16
865 73.65 humidity 50.0 10 > th dose independent rect. 6 8
910 73.92 wind 1.0 30 > th dose independent rect. 6 21
921 74.06 temperature 10.0 1440 > th dose independent rect. 7 8
924 74.06 temperature 10.0 1440 > th dose independent rect. 15 16
952 74.28 wind 1.0 10 > th dose independent rect. 6 8
991 74.58 atmosphere 1015.0 270 < th dose dependent rect. 1 2
997 74.62 atmosphere 995.0 10 > th dose independent rect. 14 16