Os10g0472900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0472900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Very-long-chain 3-ketoacyl-CoA synthase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.53	(0.318)	R²	:	0.208
β₁	:	14.5	(2.94)	R²_dD	:	9.49	R²_D	:	-11.2
β₂	:	0.638	(0.133)	R²_dC	:	0.0409	R²_C	:	-1.87
β₃	:	-11.1	(2.46)	R²_dE	:	10.2	R²_E	:	-14.4
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	117	(23.4)	R²_dD*E	:	20.6	R²_D*E	:	-16.2
γ₁	:	0.0907	(0.119)	R²_dN8	:	0.00139	R²_N8	:	-1.83
σ	:	1.02
deviance	:	482.81
__

_____

C
peak time of C	:	22.3
E
wheather	:	humidity
threshold	:	50.03
memory length	:	1374
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	16
open length of G	:	0.955

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
482.38	1.03	2.54	14.5	0.636	-11.1	-0.326	117	0.09	22.2	50.02	1381	16	0.956
569.27	1.12	4.14	0.0395	0.733	2.52	0.139	--	-0.1	0.496	50.02	1381	16	0.956
482.81	1.02	2.53	14.5	0.638	-11.1	--	117	0.0907	22.3	50.03	1374	16	0.955
556.49	1.1	4.18	0.307	0.698	2.03	--	--	0.248	23.5	57.67	1975	15.9	1.18
507.44	1.05	2.52	14.5	--	-11	--	117	0.0953	--	50	1380	16	0.967
575.58	1.12	4.14	0.0465	0.726	--	0.106	--	-0.106	0.358	--	--	--	--
575.63	1.12	4.14	0.0426	0.725	--	--	--	-0.106	0.32	--	--	--	--
526.19	1.07	4.09	0.0794	--	1.57	--	--	0.115	--	58	738	17.3	1.48
504.89	1.05	4.11	--	0.631	1.34	--	--	0.156	23.3	67.26	752	17.1	1.91
608.69	1.15	4.13	0.0668	--	--	--	--	-0.0948	--	--	--	--	--
575.67	1.12	4.14	--	0.726	--	--	--	-0.111	0.324	--	--	--	--
510.56	1.05	4.11	--	--	1.54	--	--	0.133	--	68	750	17	2.1
608.81	1.15	4.13	--	--	--	--	--	-0.102	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	483.57	humidity	50	1440	< th	dose independent	rect.	16	1
2	483.66	humidity	50	1440	< th	dose dependent	rect.	16	1
3	489.26	humidity	50	1440	> th	dose independent	rect.	16	1
4	489.60	temperature	30	720	> th	dose dependent	rect.	18	1
19	494.95	radiation	10	14400	> th	dose independent	rect.	5	1
45	496.05	radiation	40	1440	> th	dose dependent	rect.	13	1
46	497.12	radiation	40	1440	> th	dose dependent	rect.	13	20
48	497.44	radiation	40	1440	> th	dose dependent	rect.	13	3
66	498.82	humidity	70	720	< th	dose dependent	rect.	18	1
79	500.57	humidity	70	720	< th	dose independent	rect.	17	14
80	500.61	humidity	70	720	< th	dose independent	rect.	17	3
91	501.13	radiation	40	1440	> th	dose dependent	sin	13	NA
93	501.28	radiation	30	1440	> th	dose independent	rect.	16	16
106	501.39	humidity	60	720	< th	dose independent	rect.	18	1
157	503.06	temperature	30	720	> th	dose independent	rect.	18	1
173	503.63	humidity	70	720	> th	dose independent	rect.	18	8
208	505.49	humidity	50	1440	> th	dose independent	rect.	16	11
210	505.59	humidity	50	1440	> th	dose independent	rect.	16	8
211	505.59	humidity	50	1440	> th	dose independent	rect.	16	13
213	505.62	humidity	50	1440	> th	dose independent	rect.	16	4
236	505.74	humidity	70	720	> th	dose independent	rect.	17	14
267	506.66	radiation	30	14400	> th	dose independent	rect.	16	1
283	507.03	radiation	30	1440	> th	dose independent	rect.	7	1
305	507.60	temperature	30	720	< th	dose independent	rect.	18	8
310	507.81	radiation	30	1440	< th	dose independent	rect.	7	1
425	508.67	temperature	30	1440	> th	dose dependent	rect.	15	4
461	508.75	temperature	30	1440	> th	dose dependent	sin	12	NA
509	509.57	radiation	1	720	> th	dose independent	rect.	18	1
584	509.87	radiation	30	1440	< th	dose independent	rect.	21	11
590	509.97	radiation	30	1440	< th	dose independent	rect.	19	13
595	510.02	humidity	50	1440	< th	dose independent	sin	11	NA
619	510.42	humidity	70	720	> th	dose independent	sin	12	NA
660	510.57	radiation	1	720	> th	dose dependent	rect.	18	1
702	510.63	humidity	70	720	> th	dose independent	rect.	19	1
728	510.85	humidity	50	1440	> th	dose independent	sin	12	NA
800	511.11	temperature	25	720	> th	dose dependent	rect.	21	2
823	511.33	radiation	40	1440	> th	dose dependent	no	NA	NA
824	511.33	radiation	40	1440	> th	dose dependent	rect.	8	7