Os10g0471400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os10g0471400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.32 | 0.343 | 7.5 | -0.241 | 0.559 | 1.42 | -0.47 | 0.181 | -0.746 | 9.57 | 15.35 | 83 | -- | -- |
| 53.32 | 0.34 | 7.51 | -0.267 | 0.554 | 1.39 | -0.45 | -- | -0.754 | 9.56 | 15.89 | 77 | -- | -- |
| 54.03 | 0.342 | 7.51 | -0.308 | 0.553 | 1.33 | -- | -0.188 | -0.761 | 9.58 | 16.8 | 77 | -- | -- |
| 54.06 | 0.342 | 7.51 | -0.28 | 0.555 | 1.35 | -- | -- | -0.754 | 9.59 | 16.39 | 78 | -- | -- |
| 67.3 | 0.384 | 7.54 | -0.366 | -- | 1.5 | -- | -0.398 | -0.802 | -- | 17.69 | 18 | -- | -- |
| 75.47 | 0.407 | 7.46 | 0.0252 | 0.749 | -- | -0.216 | -- | -0.544 | 11.8 | -- | -- | -- | -- |
| 75.67 | 0.407 | 7.46 | 0.0168 | 0.75 | -- | -- | -- | -0.544 | 11.9 | -- | -- | -- | -- |
| 67.44 | 0.384 | 7.53 | -0.306 | -- | 1.52 | -- | -- | -0.784 | -- | 17.26 | 27 | -- | -- |
| 55.84 | 0.348 | 7.5 | -- | 0.536 | 1.18 | -- | -- | -0.709 | 9.88 | 17.66 | 51 | -- | -- |
| 111.07 | 0.492 | 7.48 | -0.00575 | -- | -- | -- | -- | -0.554 | -- | -- | -- | -- | -- |
| 75.68 | 0.407 | 7.46 | -- | 0.75 | -- | -- | -- | -0.546 | 11.9 | -- | -- | -- | -- |
| 69.75 | 0.39 | 7.52 | -- | -- | 1.41 | -- | -- | -0.74 | -- | 17.66 | 51 | -- | -- |
| 111.07 | 0.492 | 7.48 | -- | -- | -- | -- | -- | -0.553 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 2 | 50.70 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 3 | 50.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 13 | 51.83 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 23 | 52.32 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 50 | 52.72 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 23 |
| 60 | 52.87 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 13 |
| 66 | 52.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 73 | 53.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 81 | 53.11 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 20 |
| 84 | 53.14 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 112 | 53.36 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 143 | 53.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 156 | 53.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 161 | 53.59 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 9 |
| 185 | 53.60 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 15 |
| 197 | 53.63 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 216 | 53.77 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 244 | 53.86 | temperature | 15 | 270 | > th | dose dependent | sin | 22 | NA |
| 269 | 53.95 | temperature | 30 | 720 | > th | dose independent | sin | 3 | NA |
| 282 | 53.99 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 20 |
| 329 | 54.09 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 20 |
| 368 | 54.18 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 23 |
| 376 | 54.19 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 13 |
| 380 | 54.20 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 9 |
| 384 | 54.21 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 23 |
| 446 | 54.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 465 | 54.34 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 528 | 54.47 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 547 | 54.48 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 10 |
| 568 | 54.52 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 617 | 54.57 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 621 | 54.57 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 626 | 54.59 | temperature | 30 | 270 | > th | dose independent | sin | 21 | NA |
| 634 | 54.61 | temperature | 30 | 720 | > th | dose dependent | sin | 5 | NA |
| 696 | 54.72 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 697 | 54.72 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 790 | 54.73 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 806 | 54.76 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 20 |
| 991 | 55.06 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 22 |