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Os10g0469900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TGF-beta receptor, type I/II extracellular region family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.37 (0.0477) R2 : 0.404
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.48 (0.121) R2dC : 0.199 R2C : 0.167
β3 : -2.64 (0.222) R2dE : 0.188 R2E : 0.138
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.684 (0.101) R2dN8 : 0.0795 R2N8 : 0.0267
σ : 0.892
deviance : 366.87
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_____
C
peak time of C : 8.25
E
wheather : precipitation
threshold : 0.666
memory length : 5086
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 0.478
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
362.79 0.895 7.4 0.173 1.46 -2.76 -0.851 -8.22 -0.702 8.35 0.1033 4743 21.3 --
363.76 0.888 7.37 0.271 1.47 -2.68 -0.648 -- -0.654 8.29 0.6216 5084 0.125 --
365.03 0.89 7.39 0.152 1.46 -2.75 -- -8.22 -0.699 8.32 0.1044 4739 21.3 --
365.47 0.89 7.36 0.244 1.48 -2.72 -- -- -0.664 8.26 0.6321 5141 0.285 --
482.78 1.02 7.44 0.178 -- -2.75 -- -8.65 -0.683 -- 0.1901 4689 20.9 --
473.82 1.02 7.34 -0.345 1.44 -- -0.921 -- -0.555 8.31 -- -- -- --
476.46 1.02 7.34 -0.373 1.45 -- -- -- -0.555 8.28 -- -- -- --
476.49 1.02 7.37 -0.351 -- -1.44 -- -- -0.549 -- -3.638e-07 20040 20.7 --
366.87 0.892 7.37 -- 1.48 -2.64 -- -- -0.684 8.25 0.666 5086 0.478 --
592.09 1.14 7.38 -0.363 -- -- -- -- -0.539 -- -- -- -- --
480.12 1.02 7.33 -- 1.44 -- -- -- -0.513 8.3 -- -- -- --
480.21 1.02 7.38 -- -- -1.43 -- -- -0.546 -- -1.072e-06 20029 20.6 --
595.56 1.14 7.37 -- -- -- -- -- -0.499 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 354.48 precipitation 0.1 4320 > th dose dependent rect. 1 16
4 356.22 precipitation 0.1 4320 > th dose independent rect. 1 16
5 356.38 precipitation 0.1 4320 < th dose independent rect. 1 16
6 356.38 precipitation 0.1 4320 < th dose dependent rect. 1 16
12 357.01 precipitation 0.1 14400 > th dose dependent rect. 13 4
15 357.25 precipitation 0.1 14400 > th dose independent rect. 13 4
16 357.72 precipitation 0.1 14400 < th dose independent rect. 13 4
17 357.72 precipitation 0.1 14400 < th dose dependent rect. 13 4
23 359.36 precipitation 0.1 14400 > th dose independent rect. 15 2
25 359.50 precipitation 0.1 14400 > th dose dependent rect. 15 2
30 359.75 precipitation 0.1 14400 < th dose independent rect. 15 2
31 359.75 precipitation 0.1 14400 < th dose dependent rect. 15 2
47 362.01 precipitation 0.1 14400 < th dose independent rect. 3 17
48 362.01 precipitation 0.1 14400 < th dose dependent rect. 3 17
49 362.04 precipitation 0.1 14400 > th dose independent rect. 3 17
51 362.35 wind 3.0 43200 < th dose independent rect. 5 2
55 363.21 precipitation 0.1 14400 < th dose independent rect. 13 7
56 363.21 precipitation 0.1 14400 < th dose dependent rect. 13 7
57 363.23 precipitation 0.1 14400 > th dose independent rect. 13 7
73 364.15 wind 3.0 43200 > th dose independent rect. 5 2
80 364.43 humidity 90.0 14400 < th dose dependent rect. 14 1
92 364.87 wind 5.0 43200 < th dose dependent rect. 5 2
94 365.22 precipitation 0.1 4320 > th dose independent sin 3 NA
98 365.26 precipitation 0.1 4320 < th dose independent sin 3 NA
99 365.26 precipitation 0.1 4320 < th dose dependent sin 3 NA
103 365.41 precipitation 0.1 4320 > th dose dependent sin 4 NA
114 365.70 precipitation 0.1 4320 < th dose independent rect. 3 4
115 365.70 precipitation 0.1 4320 < th dose dependent rect. 3 4
119 365.89 precipitation 0.1 4320 > th dose independent rect. 3 4
127 366.04 precipitation 0.1 4320 > th dose independent rect. 4 2
129 366.07 precipitation 0.1 14400 > th dose dependent sin 2 NA
131 366.10 precipitation 0.1 4320 < th dose independent rect. 3 7
133 366.10 precipitation 0.1 4320 < th dose dependent rect. 3 7
134 366.12 precipitation 0.1 4320 < th dose independent rect. 4 2
135 366.12 precipitation 0.1 4320 < th dose dependent rect. 4 2
140 366.28 precipitation 0.1 4320 > th dose dependent rect. 4 2
141 366.30 precipitation 0.1 4320 > th dose dependent rect. 3 4
142 366.31 humidity 60.0 14400 > th dose independent rect. 14 2
144 366.32 precipitation 0.1 14400 > th dose independent rect. 7 13
146 366.35 precipitation 0.1 14400 < th dose independent rect. 7 13
147 366.35 precipitation 0.1 14400 < th dose dependent rect. 7 13
156 366.52 precipitation 0.1 14400 > th dose dependent rect. 2 18
157 366.53 humidity 70.0 14400 > th dose independent rect. 17 1
161 366.62 precipitation 0.1 14400 > th dose dependent rect. 23 21
164 366.68 humidity 70.0 14400 < th dose independent rect. 17 2
169 366.81 wind 1.0 43200 > th dose dependent rect. 5 2
173 366.83 humidity 90.0 14400 < th dose dependent rect. 11 6
183 367.05 precipitation 0.1 4320 > th dose dependent rect. 3 6
184 367.07 precipitation 0.1 14400 > th dose independent sin 1 NA
187 367.14 wind 3.0 14400 < th dose dependent rect. 1 4
188 367.15 precipitation 0.1 14400 < th dose independent sin 1 NA
189 367.15 precipitation 0.1 14400 < th dose dependent sin 1 NA
201 367.23 humidity 60.0 14400 > th dose independent rect. 13 4
209 367.30 humidity 50.0 14400 > th dose dependent rect. 14 1
219 367.40 precipitation 0.1 4320 < th dose independent rect. 3 11
221 367.40 precipitation 0.1 4320 < th dose dependent rect. 3 11
231 367.57 precipitation 0.1 4320 > th dose independent rect. 3 11
232 367.59 humidity 70.0 14400 < th dose dependent rect. 16 1
237 367.80 precipitation 0.1 14400 < th dose independent rect. 19 1
238 367.80 precipitation 0.1 14400 < th dose dependent rect. 19 1
239 367.86 precipitation 0.1 14400 > th dose independent rect. 19 1
243 368.01 precipitation 0.1 14400 > th dose dependent rect. 18 2
246 368.05 humidity 50.0 14400 > th dose dependent rect. 11 6
260 368.22 humidity 60.0 14400 < th dose independent rect. 13 3
270 368.39 humidity 50.0 14400 > th dose dependent rect. 13 4
288 368.59 humidity 70.0 14400 < th dose dependent rect. 14 4
307 368.92 humidity 60.0 14400 > th dose independent rect. 13 13
308 368.92 humidity 60.0 14400 > th dose independent rect. 13 16
311 368.93 humidity 60.0 14400 > th dose independent rect. 13 7
313 368.93 humidity 60.0 14400 > th dose independent rect. 13 11
339 369.04 humidity 50.0 14400 > th dose dependent rect. 16 1
362 369.20 humidity 60.0 14400 < th dose independent rect. 14 1
416 369.54 humidity 70.0 14400 < th dose dependent rect. 14 18
438 369.73 humidity 60.0 14400 < th dose independent rect. 13 19
491 370.00 humidity 60.0 14400 > th dose independent sin 15 NA
492 370.00 wind 3.0 14400 < th dose independent rect. 24 1
561 370.37 humidity 70.0 14400 < th dose dependent sin 14 NA
573 370.49 humidity 80.0 14400 > th dose independent rect. 9 2
600 370.62 precipitation 0.1 4320 > th dose dependent rect. 1 8
613 370.75 wind 1.0 4320 > th dose independent rect. 17 2
618 370.77 humidity 90.0 14400 > th dose dependent rect. 9 1
651 371.08 humidity 60.0 14400 < th dose independent sin 15 NA
707 371.43 humidity 70.0 14400 < th dose independent rect. 17 15
725 371.46 humidity 80.0 14400 < th dose independent rect. 10 1
847 372.12 wind 3.0 43200 < th dose independent rect. 1 7
870 372.26 humidity 90.0 14400 < th dose dependent sin 22 NA
929 372.62 precipitation 0.1 4320 > th dose dependent rect. 18 23
964 372.89 wind 3.0 43200 < th dose dependent rect. 1 7
968 372.93 wind 1.0 1440 < th dose independent rect. 9 10
983 373.04 humidity 70.0 14400 < th dose independent rect. 17 5
992 373.04 humidity 50.0 14400 > th dose dependent sin 22 NA