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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0469000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0367) R2 : 0.0107
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.171 (0.0772) R2dN8 : 0.0138 R2N8 : 0.0107
σ : 0.691
deviance : 218.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.33 0.673 3.03 0.601 0.14 -1.04 -0.702 -1.94 -0.261 7.02 5.347 2253 -- --
207.18 0.67 3.01 0.549 0.149 -0.855 -0.775 -- -0.274 6.92 4.006 2241 -- --
206.5 0.669 3.04 0.577 0.141 -1.05 -- -2.23 -0.258 7.66 5.464 2235 -- --
209.02 0.673 3.01 0.533 0.138 -0.863 -- -- -0.274 7.41 3.923 2241 -- --
207.5 0.671 3.04 0.576 -- -0.967 -- -2.22 -0.249 -- 5.502 2253 -- --
213.78 0.685 2.98 0.365 0.0667 -- -0.814 -- -0.136 6.44 -- -- -- --
215.32 0.687 2.98 0.353 0.0771 -- -- -- -0.134 4.21 -- -- -- --
209.92 0.675 3.01 0.518 -- -0.782 -- -- -0.269 -- 4 2418 -- --
215.69 0.684 3.01 -- 0.116 -0.544 -- -- -0.292 6.91 3.603 2279 -- --
215.64 0.686 2.98 0.356 -- -- -- -- -0.132 -- -- -- -- --
218.6 0.692 2.99 -- 0.0838 -- -- -- -0.173 4.13 -- -- -- --
216.27 0.685 3.01 -- -- -0.506 -- -- -0.277 -- 3.764 2418 -- --
218.98 0.691 2.99 -- -- -- -- -- -0.171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.62 humidity 80 720 < th dose independent rect. 24 1
3 199.62 humidity 80 720 < th dose dependent rect. 24 1
5 199.64 radiation 1 10 > th dose independent rect. 17 2
17 199.77 humidity 80 10 < th dose independent rect. 24 4
22 199.78 humidity 80 10 < th dose dependent rect. 24 4
26 199.86 humidity 80 90 < th dose dependent rect. 22 1
29 199.87 humidity 80 10 < th dose independent rect. 24 2
34 199.87 humidity 80 10 < th dose dependent rect. 24 2
77 202.10 temperature 20 10 < th dose dependent rect. 2 2
79 202.22 temperature 20 10 < th dose dependent rect. 4 1
85 202.77 temperature 20 10 < th dose dependent rect. 2 19
92 203.04 temperature 20 10 < th dose dependent rect. 2 14
117 203.67 temperature 25 30 > th dose independent rect. 17 1
121 203.83 temperature 25 10 > th dose dependent rect. 17 1
166 205.10 temperature 20 10 < th dose dependent sin 3 NA
167 205.12 wind 1 270 < th dose independent rect. 16 1
168 205.12 wind 1 270 < th dose dependent rect. 16 1
171 205.19 temperature 20 270 > th dose independent rect. 3 22
176 205.31 wind 7 270 > th dose dependent rect. 20 1
191 205.38 humidity 80 90 < th dose dependent rect. 22 9
194 205.48 wind 7 270 > th dose independent rect. 20 1
199 205.76 humidity 80 4320 < th dose independent rect. 21 13
203 205.84 atmosphere 1005 30 < th dose independent rect. 18 1
209 205.91 wind 3 90 < th dose dependent rect. 15 5
221 206.00 wind 7 4320 < th dose dependent rect. 20 1
227 206.02 wind 3 90 < th dose independent rect. 14 6
235 206.15 humidity 80 4320 > th dose independent rect. 21 13
264 206.30 temperature 20 270 > th dose independent rect. 18 18
274 206.35 humidity 80 4320 < th dose independent sin 8 NA
278 206.39 wind 1 4320 > th dose dependent rect. 20 1
279 206.40 wind 1 270 < th dose dependent rect. 16 3
281 206.41 atmosphere 1005 10 < th dose dependent rect. 17 1
291 206.46 wind 5 1440 < th dose dependent rect. 17 11
293 206.48 temperature 20 270 < th dose independent rect. 24 22
314 206.55 wind 3 1440 > th dose independent rect. 17 21
315 206.56 wind 3 1440 < th dose independent rect. 17 21
318 206.59 wind 5 1440 < th dose dependent rect. 9 19
338 206.65 wind 3 1440 > th dose independent rect. 17 12
339 206.65 humidity 90 4320 < th dose dependent rect. 22 12
340 206.66 wind 3 1440 > th dose independent rect. 9 20
346 206.67 wind 3 1440 < th dose independent rect. 8 21
349 206.68 humidity 80 4320 > th dose independent sin 8 NA
359 206.70 wind 3 1440 < th dose independent rect. 17 12
361 206.70 temperature 20 270 > th dose independent rect. 17 22
384 206.75 temperature 20 270 < th dose independent rect. 5 23
386 206.75 wind 1 1440 > th dose dependent rect. 17 11
470 206.92 wind 3 10 < th dose dependent rect. 14 7
474 206.93 humidity 80 4320 < th dose independent rect. 3 5
483 206.94 temperature 20 270 < th dose independent rect. 19 10
493 206.95 temperature 20 270 > th dose independent rect. 14 23
514 206.97 wind 5 1440 < th dose dependent rect. 17 22
539 207.00 temperature 20 270 < th dose independent sin 11 NA
544 207.00 wind 3 4320 < th dose dependent rect. 17 6
576 207.05 temperature 20 270 < th dose independent rect. 24 4
604 207.09 humidity 80 4320 > th dose independent rect. 23 1
669 207.14 wind 3 4320 < th dose independent rect. 18 4
742 207.18 temperature 20 270 < th dose independent no NA NA
754 207.19 wind 3 1440 > th dose independent rect. 12 1
764 207.19 humidity 90 4320 < th dose dependent rect. 2 7
776 207.21 wind 3 1440 > th dose independent sin 12 NA
777 207.21 wind 3 4320 > th dose independent rect. 18 4
789 207.22 humidity 50 270 < th dose independent rect. 15 3
851 207.27 wind 3 1440 < th dose independent rect. 12 1
853 207.27 humidity 80 4320 > th dose independent rect. 3 5
888 207.30 wind 1 4320 > th dose dependent rect. 18 5
889 207.30 wind 9 4320 < th dose dependent rect. 18 5
895 207.31 wind 5 1440 < th dose dependent sin 13 NA
904 207.32 wind 3 1440 < th dose independent sin 12 NA
926 207.34 humidity 70 4320 > th dose dependent rect. 3 7
927 207.34 temperature 25 30 > th dose dependent rect. 17 18
980 207.40 wind 3 1440 > th dose independent rect. 20 23
981 207.40 humidity 90 4320 < th dose dependent rect. 4 4
993 207.42 humidity 70 270 < th dose dependent rect. 17 1