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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0468600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0401) R2 : 0.551
β1 : -1.95 (0.153) R2dD : 0.186 R2D : 0.0353
β2 : 1.44 (0.103) R2dC : 0.193 R2C : 0.213
β3 : 2.3 (0.142) R2dE : 0.316 R2E : 0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.312 (0.09) R2dN8 : 0.0181 R2N8 : -0.0467
σ : 0.738
deviance : 251.06
__
_____
C
peak time of C : 6.21
E
wheather : temperature
threshold : 18.97
memory length : 1246
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
246.16 0.737 4.67 -2.6 1.43 2.3 -0.29 -2.43 -0.494 6.14 20.4 1285 -- --
250.91 0.738 4.59 -1.96 1.43 2.29 -0.224 -- -0.319 6.07 18.98 1284 -- --
246.35 0.731 4.67 -2.6 1.43 2.3 -- -2.43 -0.492 6.15 20.43 1274 -- --
251.06 0.738 4.59 -1.95 1.44 2.3 -- -- -0.312 6.21 18.97 1246 -- --
351.54 0.873 4.7 -2.58 -- 2.41 -- -2.33 -0.481 -- 20.5 1301 -- --
389.62 0.925 4.48 -1.14 1.57 -- -0.111 -- 0.194 5.49 -- -- -- --
389.65 0.924 4.48 -1.14 1.57 -- -- -- 0.194 5.49 -- -- -- --
356.01 0.879 4.62 -1.96 -- 2.4 -- -- -0.312 -- 19.17 1304 -- --
334.17 0.851 4.51 -- 1.45 1.59 -- -- 0.0412 6.14 21.9 1232 -- --
517.9 1.06 4.5 -1.09 -- -- -- -- 0.233 -- -- -- -- --
423.95 0.963 4.45 -- 1.55 -- -- -- 0.321 5.52 -- -- -- --
438.75 0.976 4.54 -- -- 1.7 -- -- 0.0424 -- 22.13 1292 -- --
549.16 1.09 4.47 -- -- -- -- -- 0.353 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.32 temperature 20 720 > th dose dependent rect. 17 16
5 245.73 wind 5 43200 > th dose dependent rect. 3 13
9 246.05 wind 5 43200 > th dose independent rect. 4 12
12 246.17 wind 5 43200 > th dose independent rect. 2 15
16 246.34 wind 5 43200 > th dose independent rect. 24 17
17 246.44 wind 5 43200 < th dose independent rect. 4 12
23 246.52 wind 5 43200 < th dose independent rect. 24 17
24 246.58 temperature 20 720 > th dose dependent sin 12 NA
25 246.61 wind 5 43200 < th dose independent rect. 2 15
36 246.98 temperature 20 1440 > th dose dependent rect. 5 18
70 247.72 temperature 20 1440 > th dose dependent rect. 16 6
79 247.85 wind 5 43200 > th dose dependent sin 2 NA
85 247.93 wind 5 43200 < th dose independent rect. 20 21
89 247.97 wind 5 43200 > th dose independent sin 2 NA
95 248.05 temperature 20 1440 > th dose dependent rect. 7 1
106 248.11 wind 5 43200 > th dose independent rect. 20 21
117 248.21 temperature 20 1440 > th dose dependent rect. 15 23
124 248.30 wind 5 43200 < th dose independent sin 2 NA
130 248.33 temperature 20 1440 > th dose dependent rect. 15 21
132 248.34 temperature 20 1440 > th dose dependent rect. 13 23
142 248.45 wind 5 43200 > th dose dependent rect. 19 21
153 248.58 temperature 20 1440 > th dose dependent no NA NA
157 248.61 temperature 20 1440 > th dose dependent rect. 18 1
168 248.69 temperature 20 1440 > th dose dependent rect. 11 23
173 248.71 temperature 20 1440 > th dose dependent rect. 20 23
199 248.91 temperature 10 1440 > th dose dependent rect. 18 1
212 249.00 temperature 20 1440 > th dose dependent rect. 6 3
214 249.01 temperature 10 1440 > th dose dependent rect. 7 1
265 249.33 temperature 20 1440 > th dose dependent sin 2 NA
313 249.61 radiation 10 14400 > th dose dependent rect. 17 13
317 249.64 radiation 1 14400 > th dose dependent rect. 18 1
328 249.66 temperature 20 1440 > th dose dependent sin 18 NA
331 249.66 wind 5 43200 > th dose dependent rect. 24 21
336 249.69 wind 5 43200 > th dose dependent rect. 2 19
345 249.72 wind 5 43200 > th dose independent rect. 24 22
346 249.72 temperature 30 1440 < th dose dependent rect. 7 1
392 249.90 wind 5 43200 > th dose independent rect. 2 20
458 250.22 temperature 20 1440 > th dose dependent rect. 3 11
536 250.52 wind 5 43200 < th dose independent rect. 24 22
558 250.60 wind 5 43200 > th dose independent no NA NA
574 250.66 wind 5 43200 > th dose independent rect. 8 23
599 250.76 wind 5 43200 > th dose independent rect. 5 23
623 250.84 wind 5 43200 > th dose independent rect. 10 23
648 250.91 wind 5 43200 > th dose dependent no NA NA
652 250.92 wind 5 43200 > th dose independent rect. 13 23
703 251.05 wind 5 43200 > th dose dependent rect. 10 23
708 251.06 wind 5 43200 > th dose dependent rect. 8 23
747 251.20 radiation 30 14400 < th dose independent rect. 16 2
775 251.31 wind 5 43200 < th dose independent no NA NA
781 251.33 radiation 10 4320 < th dose dependent rect. 18 11
806 251.39 temperature 30 720 < th dose dependent rect. 15 17
813 251.41 wind 5 43200 > th dose dependent rect. 13 23
859 251.59 wind 5 43200 < th dose independent rect. 8 23
868 251.63 radiation 30 14400 < th dose independent rect. 16 4
869 251.63 wind 5 43200 < th dose independent rect. 5 23
881 251.69 humidity 60 14400 < th dose independent rect. 17 3
885 251.70 wind 5 43200 < th dose independent rect. 10 23
913 251.75 radiation 30 14400 < th dose independent rect. 16 12
922 251.78 wind 5 43200 < th dose independent rect. 13 23