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Os10g0468500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tyrosine protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.05 (0.0515) R2 : 0.784
β1 : 1.74 (0.201) R2dD : 0.0593 R2D : -0.0329
β2 : 4.25 (0.113) R2dC : 0.681 R2C : 0.724
β3 : 2.13 (0.223) R2dE : 0.0747 R2E : 0.00784
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.92 (0.963) R2dD*E : 0.0427 R2D*E : -0.0166
γ1 : 0.522 (0.106) R2dN8 : 0.0204 R2N8 : 0.0033
σ : 0.807
deviance : 300.5
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_____
C
peak time of C : 6.82
E
wheather : radiation
threshold : 1.125
memory length : 5460
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.65 0.8 7.05 1.69 4.24 2.09 2.08 6.81 0.525 6.82 1.121 5521 18 11
313.73 0.825 6.99 1.51 4.33 2.08 2.53 -- 0.325 6.78 1.24 6904 18 11.6
300.5 0.807 7.05 1.74 4.25 2.13 -- 6.92 0.522 6.82 1.125 5460 18 11
318.76 0.832 6.99 1.52 4.34 2.04 -- -- 0.329 6.78 1.221 6000 17.9 11.7
408.35 0.941 6.94 0.907 -- 4.84 -- 6.13 0.593 -- -154.2 13649 18.3 13.5
360.38 0.89 6.94 0.404 4.38 -- 2.19 -- 0.307 6.78 -- -- -- --
372.64 0.904 6.95 0.44 4.38 -- -- -- 0.301 6.77 -- -- -- --
379.25 0.907 7.08 0.521 -- 4.88 -- -- 0.345 -- -150.7 13642 18.4 13.4
319.81 0.833 6.99 -- 4.55 2.04 -- -- 0.25 6.51 1.12 3957 18 12.7
1376.97 1.73 7.04 0.539 -- -- -- -- 0.387 -- -- -- -- --
377.75 0.909 6.96 -- 4.39 -- -- -- 0.252 6.77 -- -- -- --
380.18 0.908 7.07 -- -- 4.8 -- -- 0.195 -- -153.3 13693 17.9 13.3
1384.63 1.74 7.05 -- -- -- -- -- 0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 300.85 radiation 20 4320 < th dose dependent rect. 18 1
7 302.40 radiation 1 4320 > th dose independent rect. 18 11
9 302.47 radiation 10 4320 < th dose dependent rect. 18 11
11 302.73 radiation 1 4320 > th dose independent rect. 18 1
21 303.12 radiation 1 4320 < th dose independent rect. 18 11
23 303.37 radiation 1 4320 < th dose independent rect. 18 1
35 304.42 radiation 1 4320 > th dose independent rect. 18 16
41 304.82 radiation 1 4320 > th dose independent rect. 18 23
42 304.87 radiation 1 4320 > th dose independent rect. 18 20
44 305.01 radiation 1 4320 > th dose independent rect. 18 14
48 305.25 radiation 1 4320 < th dose independent rect. 18 16
50 305.37 radiation 1 4320 < th dose independent rect. 18 23
54 305.68 radiation 1 4320 < th dose independent rect. 18 20
57 305.84 radiation 1 4320 < th dose independent rect. 18 14
60 305.86 wind 3 43200 < th dose independent rect. 3 1
64 306.04 wind 3 43200 > th dose independent rect. 3 1
81 306.33 wind 5 43200 < th dose dependent rect. 3 1
94 306.82 wind 1 43200 > th dose dependent rect. 3 1
95 307.33 wind 9 43200 < th dose dependent rect. 3 1
98 307.51 radiation 40 4320 < th dose independent rect. 23 10
106 307.78 radiation 40 4320 < th dose independent rect. 16 17
114 308.06 humidity 80 43200 > th dose dependent rect. 10 1
125 308.22 atmosphere 1005 43200 > th dose independent rect. 16 1
129 308.27 radiation 40 4320 < th dose independent rect. 7 2
133 308.33 humidity 70 14400 < th dose dependent rect. 18 1
141 308.51 radiation 1 4320 < th dose dependent rect. 18 16
148 308.60 radiation 1 4320 < th dose dependent rect. 18 14
149 308.61 radiation 1 4320 < th dose independent rect. 23 18
152 308.62 radiation 1 4320 > th dose independent rect. 5 12
155 308.65 atmosphere 1005 43200 > th dose independent rect. 13 4
156 308.66 radiation 1 4320 < th dose independent rect. 5 12
169 308.74 radiation 1 4320 < th dose dependent rect. 18 23
183 308.77 humidity 70 14400 < th dose dependent rect. 18 13
189 308.81 humidity 90 43200 < th dose independent rect. 9 1
200 308.82 atmosphere 1005 43200 < th dose independent rect. 13 1
202 308.85 humidity 90 43200 > th dose independent rect. 9 1
205 308.86 radiation 1 4320 < th dose dependent rect. 18 19
211 308.96 atmosphere 1005 43200 > th dose independent rect. 13 6
222 309.06 atmosphere 1005 43200 < th dose independent rect. 18 1
223 309.06 atmosphere 1005 43200 < th dose independent rect. 13 4
234 309.19 atmosphere 1005 43200 < th dose independent rect. 13 6
241 309.23 atmosphere 1005 43200 < th dose independent rect. 16 1
245 309.24 wind 3 43200 > th dose dependent rect. 5 1
250 309.28 atmosphere 1005 43200 > th dose independent rect. 18 1
266 309.50 radiation 1 4320 > th dose independent sin 10 NA
270 309.54 humidity 80 43200 > th dose independent rect. 10 5
274 309.55 atmosphere 1005 43200 < th dose independent rect. 16 3
288 309.66 wind 9 43200 > th dose dependent rect. 18 1
289 309.68 radiation 1 4320 < th dose independent sin 4 NA
292 309.69 radiation 1 4320 > th dose independent sin 4 NA
308 309.84 radiation 1 4320 < th dose independent sin 10 NA
317 309.89 radiation 1 4320 > th dose independent rect. 5 5
334 309.95 radiation 1 4320 < th dose independent rect. 5 5
338 309.99 wind 1 43200 > th dose dependent rect. 24 4
341 310.02 humidity 80 43200 < th dose independent rect. 10 4
363 310.21 wind 7 43200 < th dose dependent rect. 11 1
369 310.24 humidity 80 43200 > th dose independent rect. 12 3
372 310.28 radiation 1 4320 < th dose independent rect. 23 11
375 310.29 radiation 1 4320 < th dose independent rect. 1 9
398 310.39 radiation 1 4320 > th dose independent rect. 5 9
402 310.40 wind 1 43200 > th dose dependent rect. 11 1
435 310.52 radiation 1 4320 < th dose independent rect. 5 9
453 310.59 humidity 80 43200 < th dose independent rect. 13 1
516 310.79 radiation 1 4320 > th dose independent rect. 16 18
554 310.92 wind 9 43200 < th dose dependent rect. 24 13
584 310.99 wind 1 43200 > th dose dependent rect. 24 13
592 311.01 wind 9 43200 < th dose dependent rect. 3 10
633 311.07 wind 3 43200 < th dose independent rect. 24 5
635 311.07 wind 1 43200 > th dose dependent rect. 3 4
638 311.08 radiation 20 14400 < th dose independent rect. 16 15
662 311.20 wind 1 43200 > th dose dependent rect. 3 10
668 311.23 radiation 1 14400 > th dose dependent rect. 18 1
684 311.27 wind 1 43200 > th dose dependent rect. 24 7
753 311.48 radiation 1 4320 < th dose dependent rect. 2 8
761 311.53 wind 9 43200 < th dose dependent rect. 20 2
770 311.56 wind 1 43200 > th dose dependent rect. 20 2
778 311.58 humidity 70 14400 < th dose independent rect. 18 4
808 311.62 temperature 20 14400 > th dose dependent rect. 15 1
809 311.64 wind 5 43200 < th dose independent rect. 10 3
819 311.66 radiation 1 4320 < th dose independent rect. 16 18
820 311.66 wind 9 43200 < th dose dependent rect. 3 4
822 311.66 radiation 1 4320 < th dose dependent rect. 5 5
863 311.80 wind 5 43200 > th dose independent rect. 11 1
875 311.82 radiation 1 4320 > th dose independent rect. 9 23
906 311.87 wind 5 43200 > th dose independent rect. 10 3
910 311.88 radiation 1 4320 > th dose independent no NA NA
911 311.88 wind 3 43200 > th dose independent rect. 24 5
962 311.90 temperature 10 14400 > th dose dependent rect. 15 1
981 311.95 radiation 1 4320 < th dose dependent rect. 2 15