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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0467900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.71 (0.0411) R2 : 0.609
β1 : 0.627 (0.148) R2dD : 0.0149 R2D : -0.0398
β2 : 2.74 (0.108) R2dC : 0.609 R2C : 0.416
β3 : -1.11 (0.0981) R2dE : 0.138 R2E : -0.152
β4 : 3.05 (0.447) R2dD*C : 0.0412 R2D*C : -0.000876
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.737 (0.0922) R2dN8 : 0.0804 R2N8 : -0.0212
σ : 0.749
deviance : 258.68
__
_____
C
peak time of C : 7.68
E
wheather : temperature
threshold : 24.53
memory length : 222
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 23
open length of G : 15.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.86 0.754 4.71 0.725 2.72 -1.11 3.02 0.769 0.72 7.66 24.6 241 23.1 15.7
258.68 0.749 4.71 0.627 2.74 -1.11 3.05 -- 0.737 7.68 24.53 222 23 15.9
282.44 0.783 4.71 0.81 2.71 -1.09 -- 1.1 0.731 7.65 24.6 213 23 16
285.22 0.787 4.72 0.681 2.7 -1.11 -- -- 0.74 7.77 24.57 206 23 16.4
463.86 1 4.77 1.24 -- -2.1 -- 0.113 0.847 -- 25.3 718 23.9 17.2
311.02 0.827 4.82 0.397 2.43 -- 3.2 -- 0.297 6.92 -- -- -- --
337.51 0.86 4.83 0.454 2.44 -- -- -- 0.289 6.88 -- -- -- --
401.55 0.933 4.65 0.653 -- -3.05 -- -- 0.908 -- 21.1 802 4.48 13.2
296.6 0.802 4.73 -- 2.72 -0.993 -- -- 0.659 7.68 24.6 197 23.1 16.4
648.9 1.19 4.88 0.506 -- -- -- -- 0.335 -- -- -- -- --
342.94 0.866 4.84 -- 2.44 -- -- -- 0.238 6.87 -- -- -- --
342.94 0.863 4.86 -- -- -2.33 -- -- 0.371 -- 17.96 447 8.67 13.7
655.66 1.2 4.89 -- -- -- -- -- 0.279 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.38 temperature 10.0 30 > th dose dependent rect. 23 17
2 261.22 temperature 10.0 270 > th dose dependent rect. 20 19
8 263.17 atmosphere 995.0 30 > th dose dependent rect. 16 7
23 266.32 temperature 25.0 270 > th dose independent rect. 23 15
29 267.41 atmosphere 1000.0 30 > th dose independent rect. 16 7
30 267.51 temperature 25.0 270 < th dose independent rect. 1 9
33 267.74 temperature 10.0 30 > th dose dependent rect. 23 19
37 268.00 temperature 30.0 270 < th dose dependent rect. 1 9
38 268.01 temperature 10.0 270 > th dose dependent rect. 6 9
57 269.56 temperature 20.0 270 > th dose independent rect. 20 19
74 271.00 temperature 20.0 30 > th dose dependent rect. 1 15
75 271.05 wind 7.0 270 < th dose dependent rect. 23 1
76 271.10 humidity 70.0 270 > th dose dependent rect. 23 1
93 272.02 humidity 70.0 10 > th dose dependent rect. 23 5
94 272.02 atmosphere 995.0 270 > th dose dependent rect. 15 5
97 272.05 wind 5.0 90 < th dose dependent rect. 23 4
100 272.33 temperature 10.0 270 > th dose dependent rect. 23 1
106 272.52 temperature 10.0 10 > th dose dependent rect. 23 6
113 272.67 humidity 80.0 90 > th dose dependent rect. 23 4
121 272.99 wind 5.0 270 < th dose independent rect. 23 1
136 273.26 radiation 10.0 10 < th dose independent rect. 16 7
140 273.32 temperature 30.0 90 < th dose dependent rect. 3 8
142 273.49 radiation 10.0 14400 < th dose dependent rect. 24 4
143 273.50 humidity 90.0 10 > th dose independent rect. 22 5
149 273.56 radiation 30.0 10 < th dose dependent rect. 16 7
151 273.63 humidity 50.0 30 > th dose independent rect. 16 7
160 273.75 wind 1.0 10 > th dose independent rect. 16 7
178 274.16 wind 9.0 30 < th dose independent rect. 23 17
186 274.30 radiation 1.0 30 < th dose independent rect. 23 9
190 274.32 temperature 10.0 30 > th dose independent rect. 16 7
192 274.32 atmosphere 1010.0 30 < th dose independent rect. 16 7
195 274.32 temperature 10.0 30 > th dose independent rect. 23 17
198 274.35 atmosphere 995.0 270 > th dose independent rect. 15 5
199 274.36 wind 9.0 30 < th dose independent rect. 16 7
206 274.41 atmosphere 995.0 30 > th dose dependent rect. 18 5
210 274.53 radiation 1.0 30 < th dose independent rect. 23 17
227 274.67 temperature 10.0 1440 > th dose independent rect. 17 7
230 274.67 radiation 30.0 1440 < th dose independent rect. 17 7
236 274.67 temperature 10.0 1440 > th dose independent rect. 24 17
246 274.77 atmosphere 1015.0 30 < th dose independent rect. 23 17
258 274.94 precipitation 0.1 10 < th dose independent rect. 16 7
259 274.94 atmosphere 995.0 270 > th dose independent rect. 16 14
260 274.94 precipitation 0.1 10 < th dose dependent rect. 16 7
272 275.06 temperature 30.0 30 < th dose independent rect. 16 7
299 275.36 radiation 1.0 30 < th dose dependent rect. 23 9
321 275.61 atmosphere 995.0 10 > th dose independent rect. 5 18
342 275.93 radiation 1.0 30 < th dose dependent rect. 23 18
344 275.95 atmosphere 995.0 10 > th dose dependent rect. 5 18
355 276.05 wind 9.0 270 < th dose dependent rect. 20 6
356 276.09 temperature 20.0 270 > th dose independent rect. 6 10
359 276.16 atmosphere 995.0 270 > th dose independent rect. 3 17
363 276.20 temperature 10.0 270 > th dose dependent rect. 20 7
387 276.52 precipitation 0.1 30 < th dose independent rect. 23 17
388 276.52 precipitation 0.1 30 < th dose dependent rect. 23 17
389 276.54 atmosphere 1000.0 30 > th dose independent rect. 18 5
393 276.59 radiation 1.0 30 < th dose dependent rect. 23 7
396 276.67 atmosphere 995.0 30 > th dose independent rect. 23 17
398 276.68 precipitation 0.1 270 < th dose independent rect. 23 1
399 276.68 precipitation 0.1 270 < th dose dependent rect. 23 1
400 276.69 precipitation 0.1 10 < th dose independent rect. 5 18
401 276.69 precipitation 0.1 10 < th dose dependent rect. 5 18
404 276.78 radiation 1.0 30 < th dose independent rect. 23 7
417 276.87 wind 3.0 90 < th dose independent rect. 23 4
420 276.88 temperature 10.0 270 > th dose independent rect. 23 1
421 276.88 temperature 30.0 270 < th dose independent rect. 23 1
422 276.88 humidity 50.0 270 > th dose independent rect. 23 1
425 276.88 atmosphere 995.0 270 > th dose independent rect. 23 1
426 276.88 radiation 1.0 270 < th dose independent rect. 23 1
431 276.88 temperature 10.0 270 > th dose independent rect. 24 23
432 276.88 radiation 1.0 270 < th dose dependent rect. 23 1
451 277.14 temperature 20.0 270 > th dose independent rect. 20 6
456 277.22 precipitation 0.1 270 < th dose independent rect. 1 10
457 277.22 precipitation 0.1 270 < th dose dependent rect. 1 10
462 277.26 wind 9.0 10 < th dose independent rect. 23 6
463 277.26 temperature 10.0 10 > th dose independent rect. 23 6
464 277.26 temperature 30.0 10 < th dose independent rect. 23 6
465 277.26 humidity 50.0 10 > th dose independent rect. 23 6
468 277.26 atmosphere 995.0 10 > th dose independent rect. 23 6
474 277.26 temperature 10.0 10 > th dose independent rect. 5 18
476 277.26 atmosphere 1015.0 10 < th dose independent rect. 5 18
487 277.32 temperature 30.0 90 < th dose dependent rect. 3 18
488 277.33 wind 7.0 270 < th dose independent rect. 20 19
497 277.45 temperature 25.0 270 < th dose independent sin 6 NA
522 277.70 temperature 15.0 270 > th dose independent rect. 15 6
527 277.74 temperature 15.0 270 > th dose independent rect. 16 14
539 277.83 wind 5.0 270 < th dose independent rect. 20 6
581 278.03 wind 9.0 10 < th dose independent rect. 5 18
602 278.29 temperature 30.0 10 < th dose independent rect. 5 18
603 278.30 radiation 40.0 270 < th dose independent rect. 15 6
611 278.39 humidity 50.0 30 > th dose independent rect. 23 17
612 278.41 wind 9.0 30 < th dose dependent rect. 16 7
621 278.49 wind 9.0 270 < th dose independent rect. 6 10
631 278.60 temperature 25.0 270 > th dose independent sin 6 NA
637 278.62 atmosphere 1010.0 270 < th dose independent rect. 15 6
639 278.63 temperature 20.0 10 > th dose independent rect. 23 5
645 278.66 temperature 10.0 270 > th dose independent rect. 21 18
658 278.79 wind 1.0 270 > th dose independent rect. 15 5
684 278.85 temperature 20.0 270 > th dose dependent sin 6 NA
697 278.93 atmosphere 1015.0 270 < th dose independent rect. 23 1
698 278.93 temperature 30.0 30 < th dose dependent rect. 3 20
713 279.01 wind 9.0 30 < th dose dependent rect. 23 17
719 279.06 wind 9.0 270 < th dose independent rect. 15 5
720 279.07 radiation 30.0 270 < th dose independent rect. 16 14
727 279.10 temperature 10.0 270 > th dose independent rect. 6 10
728 279.10 atmosphere 1015.0 270 < th dose independent rect. 6 10
742 279.24 humidity 90.0 10 > th dose independent rect. 20 8
767 279.40 precipitation 0.1 30 < th dose independent rect. 23 6
768 279.40 precipitation 0.1 30 < th dose dependent rect. 23 6
776 279.45 wind 3.0 90 < th dose dependent rect. 14 13
782 279.48 radiation 10.0 14400 < th dose dependent rect. 22 6
789 279.54 atmosphere 1015.0 10 < th dose independent rect. 23 6
798 279.61 temperature 10.0 30 > th dose dependent rect. 16 7
803 279.66 wind 9.0 270 < th dose independent rect. 11 14
824 279.76 wind 9.0 270 < th dose independent rect. 16 14
835 279.86 precipitation 0.1 270 < th dose independent rect. 6 10
836 279.86 precipitation 0.1 270 < th dose dependent rect. 6 10
842 279.90 atmosphere 995.0 270 > th dose independent rect. 21 18
845 279.91 radiation 1.0 30 < th dose dependent rect. 11 12
872 280.03 temperature 20.0 270 > th dose independent rect. 16 3
873 280.03 wind 7.0 30 < th dose independent rect. 23 19
886 280.10 temperature 30.0 270 < th dose dependent rect. 1 18
910 280.14 temperature 25.0 30 > th dose independent rect. 16 9
962 280.35 precipitation 0.1 270 < th dose independent rect. 3 17
965 280.35 precipitation 0.1 270 < th dose dependent rect. 3 17
985 280.41 wind 9.0 270 < th dose dependent rect. 11 14
993 280.43 radiation 1.0 30 < th dose independent rect. 21 19