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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0467800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cellulose synthase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.36 (0.105) R2 : 0.585
β1 : -9.82 (0.41) R2dD : 0.62 R2D : 0.459
β2 : 2.28 (0.357) R2dC : 0.0653 R2C : -0.0513
β3 : -4.54 (0.653) R2dE : 0.0804 R2E : -0.0421
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.51 (2) R2dD*E : 0.0252 R2D*E : -0.0906
γ1 : -2.05 (0.235) R2dN8 : 0.102 R2N8 : -0.0439
σ : 1.96
deviance : 1767.89
__
_____
C
peak time of C : 6.31
E
wheather : radiation
threshold : 9.511
memory length : 1246
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 12.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1784.04 1.98 6.38 -9.86 1.49 -3.66 1.13 8.41 -2.09 6 10.21 1337 12.4 --
1836.18 2 6.31 -9.22 2.22 -4.02 3.46 -- -1.79 6.82 10.13 1238 11.2 --
1767.89 1.96 6.36 -9.82 2.28 -4.54 -- 9.51 -2.05 6.31 9.511 1246 12.2 --
1857.04 2.01 6.33 -9.11 2.43 -4.19 -- -- -1.86 6.48 10 1225 11.5 --
1868.96 2.01 6.34 -9.68 -- -2.74 -- 8.17 -1.86 -- 9.999 1413 12.2 --
1981.14 2.09 6.3 -9.19 0.778 -- 2.9 -- -1.49 5.33 -- -- -- --
2000.6 2.09 6.31 -9.19 0.806 -- -- -- -1.51 4.6 -- -- -- --
1919.46 2.04 6.42 -9.18 -- -2.37 -- -- -1.93 -- 13.46 1445 9.99 --
3969.9 2.93 6.06 -- 0.985 -4.21 -- -- -0.822 1.13 10 1474 8.53 --
2035.15 2.11 6.31 -9.15 -- -- -- -- -1.48 -- -- -- -- --
4224.34 3.04 6.08 -- 0.638 -- -- -- -0.483 4.98 -- -- -- --
3975.92 2.94 6.21 -- -- -3.64 -- -- -1.02 -- 10 1442 8.75 --
4245.78 3.04 6.08 -- -- -- -- -- -0.469 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1779.78 radiation 10 1440 < th dose independent rect. 15 1
2 1783.17 wind 1 14400 < th dose dependent rect. 1 3
3 1792.72 wind 1 14400 < th dose independent rect. 1 2
4 1793.33 atmosphere 995 43200 < th dose dependent rect. 14 18
5 1795.19 atmosphere 995 43200 < th dose independent sin 11 NA
6 1795.59 atmosphere 995 43200 < th dose dependent rect. 14 14
7 1795.73 atmosphere 995 43200 > th dose independent sin 11 NA
8 1795.82 atmosphere 995 43200 < th dose dependent sin 14 NA
17 1799.54 atmosphere 995 43200 < th dose dependent rect. 17 7
19 1799.92 atmosphere 995 43200 < th dose independent rect. 17 16
20 1801.21 atmosphere 995 43200 > th dose independent rect. 17 16
29 1805.15 radiation 10 1440 < th dose dependent rect. 11 7
31 1805.51 radiation 10 1440 < th dose dependent rect. 11 16
34 1805.58 radiation 10 1440 < th dose dependent rect. 11 14
41 1805.99 atmosphere 995 43200 < th dose independent rect. 18 7
48 1809.64 atmosphere 995 43200 < th dose dependent rect. 18 5
49 1810.07 atmosphere 995 43200 > th dose independent rect. 18 8
89 1813.89 wind 1 14400 > th dose independent rect. 1 3
91 1815.09 radiation 10 1440 < th dose dependent sin 17 NA
93 1815.50 atmosphere 995 43200 < th dose dependent rect. 16 10
134 1823.22 wind 1 14400 < th dose independent rect. 14 1
163 1825.86 wind 1 14400 > th dose independent rect. 14 1
175 1828.08 radiation 10 1440 > th dose independent rect. 11 19
177 1828.21 radiation 10 1440 > th dose independent rect. 11 7
189 1828.52 wind 1 14400 < th dose dependent rect. 14 1
192 1829.03 radiation 10 1440 > th dose independent rect. 11 1
199 1830.07 wind 3 4320 > th dose independent rect. 8 1
201 1830.59 radiation 20 1440 > th dose dependent rect. 16 15
205 1830.85 temperature 20 90 > th dose dependent rect. 4 1
208 1831.50 radiation 20 1440 > th dose dependent rect. 16 1
222 1831.58 humidity 80 1440 < th dose dependent rect. 15 6
229 1832.25 wind 3 4320 < th dose independent rect. 8 1
231 1832.30 humidity 50 1440 > th dose dependent rect. 11 22
237 1832.90 humidity 90 1440 < th dose dependent rect. 11 22
238 1832.97 atmosphere 995 43200 > th dose independent rect. 20 2
242 1833.36 radiation 30 4320 > th dose independent rect. 15 17
257 1834.11 humidity 50 1440 > th dose dependent rect. 17 23
258 1834.16 humidity 50 1440 > th dose dependent rect. 11 19
262 1834.37 humidity 50 1440 > th dose dependent rect. 8 22
268 1834.47 atmosphere 995 43200 < th dose independent rect. 21 1
280 1834.47 atmosphere 995 43200 < th dose dependent rect. 21 1
293 1834.50 humidity 80 1440 < th dose dependent sin 15 NA
299 1834.66 atmosphere 995 43200 > th dose independent rect. 23 1
305 1834.79 wind 1 90 < th dose independent rect. 4 1
327 1835.07 humidity 90 1440 < th dose dependent rect. 11 13
338 1835.19 humidity 50 1440 > th dose dependent rect. 24 23
344 1835.27 humidity 90 1440 < th dose dependent rect. 11 15
346 1835.28 temperature 20 90 > th dose independent rect. 4 1
350 1835.34 humidity 50 1440 > th dose dependent rect. 22 23
351 1835.37 humidity 70 1440 < th dose independent rect. 15 18
354 1835.44 humidity 50 1440 > th dose dependent no NA NA
355 1835.45 radiation 10 1440 > th dose independent sin 16 NA
357 1835.48 humidity 50 1440 > th dose dependent rect. 4 23
373 1835.87 humidity 80 1440 < th dose dependent rect. 16 1
374 1835.91 humidity 90 1440 < th dose dependent sin 18 NA
382 1835.99 humidity 50 1440 > th dose dependent rect. 20 23
410 1836.43 humidity 90 1440 < th dose dependent rect. 5 21
416 1836.52 humidity 90 1440 < th dose dependent rect. 5 19
425 1836.64 humidity 80 1440 < th dose dependent rect. 15 18
439 1836.80 humidity 90 1440 < th dose dependent rect. 1 22
441 1836.83 humidity 70 1440 < th dose independent rect. 15 5
470 1836.97 radiation 10 1440 < th dose dependent rect. 11 2
479 1837.11 temperature 30 1440 > th dose dependent rect. 18 15
493 1837.28 humidity 70 1440 > th dose independent rect. 15 17
509 1837.43 humidity 90 1440 < th dose dependent rect. 7 23
513 1837.48 humidity 90 1440 < th dose dependent no NA NA
522 1837.54 humidity 90 1440 < th dose dependent rect. 17 23
524 1837.56 humidity 70 4320 > th dose independent rect. 19 13
532 1837.62 radiation 10 1440 < th dose independent rect. 15 12
536 1837.65 humidity 70 1440 < th dose independent sin 12 NA
548 1837.73 radiation 10 1440 < th dose independent rect. 15 10
560 1837.82 humidity 90 1440 < th dose dependent rect. 22 23
615 1838.34 radiation 10 1440 > th dose independent rect. 15 2
631 1838.54 humidity 50 1440 > th dose dependent sin 18 NA
655 1838.84 humidity 90 1440 < th dose dependent rect. 19 23
661 1838.91 humidity 70 1440 > th dose independent rect. 15 12
667 1838.93 humidity 70 1440 > th dose independent rect. 15 5
671 1838.96 humidity 70 1440 > th dose independent rect. 15 10
703 1839.24 wind 1 4320 < th dose independent rect. 3 4
805 1840.35 wind 3 4320 > th dose independent rect. 5 4
861 1840.78 humidity 70 1440 > th dose independent sin 12 NA
879 1841.01 wind 1 90 < th dose dependent rect. 4 1
895 1841.27 radiation 10 1440 > th dose independent rect. 15 15
969 1841.75 humidity 80 1440 > th dose independent rect. 7 15
973 1841.75 temperature 30 1440 > th dose dependent rect. 18 1