Os10g0465700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).
FiT-DB / Search/ Help/ Sample detail
|
Os10g0465700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 262.41 | 0.761 | 13.2 | 2.01 | 4.32 | -1.32 | 1.14 | -0.457 | 0.628 | 8.57 | 67.75 | 6 | -- | -- |
| 262.97 | 0.755 | 13.2 | 2 | 4.31 | -1.34 | 1.28 | -- | 0.632 | 8.57 | 67.99 | 4 | -- | -- |
| 265.98 | 0.765 | 13.2 | 2.06 | 4.32 | -1.33 | -- | -0.805 | 0.623 | 8.55 | 68.13 | 4 | -- | -- |
| 268.28 | 0.763 | 13.2 | 2.03 | 4.32 | -1.36 | -- | -- | 0.616 | 8.54 | 68.7 | 4 | -- | -- |
| 1295.98 | 1.68 | 13.4 | 2.09 | -- | -1.86 | -- | -0.562 | 0.664 | -- | 64 | 2 | -- | -- |
| 302.8 | 0.816 | 13.2 | 1.97 | 4.49 | -- | 1.54 | -- | 0.742 | 9.5 | -- | -- | -- | -- |
| 311.54 | 0.827 | 13.2 | 2.02 | 4.48 | -- | -- | -- | 0.744 | 9.48 | -- | -- | -- | -- |
| 1295.91 | 1.68 | 13.4 | 2.06 | -- | -1.87 | -- | -- | 0.652 | -- | 64 | 2 | -- | -- |
| 376.7 | 0.909 | 13.3 | -- | 4.32 | -1.36 | -- | -- | 0.389 | 8.51 | 67.96 | 6 | -- | -- |
| 1492.32 | 1.81 | 13.3 | 2 | -- | -- | -- | -- | 0.757 | -- | -- | -- | -- | -- |
| 419.6 | 0.958 | 13.3 | -- | 4.48 | -- | -- | -- | 0.518 | 9.45 | -- | -- | -- | -- |
| 1408.12 | 1.75 | 13.4 | -- | -- | -1.84 | -- | -- | 0.425 | -- | 64 | 4 | -- | -- |
| 1597.33 | 1.87 | 13.4 | -- | -- | -- | -- | -- | 0.536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 255.53 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 22 |
| 3 | 256.96 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 6 | 257.71 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 8 | 257.88 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 13 | 21 |
| 9 | 258.06 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 24 | 259.33 | radiation | 1.0 | 90 | > th | dose independent | sin | 1 | NA |
| 25 | 259.33 | radiation | 1.0 | 90 | < th | dose independent | sin | 1 | NA |
| 53 | 260.90 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 18 |
| 60 | 261.10 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 61 | 261.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 85 | 261.74 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 86 | 261.74 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 89 | 261.78 | radiation | 10.0 | 30 | < th | dose dependent | sin | 0 | NA |
| 156 | 263.22 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 171 | 263.64 | humidity | 70.0 | 10 | > th | dose dependent | no | NA | NA |
| 174 | 263.69 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 176 | 263.70 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 186 | 263.98 | humidity | 80.0 | 30 | > th | dose independent | rect. | 1 | 22 |
| 189 | 264.12 | humidity | 90.0 | 10 | < th | dose independent | rect. | 23 | 16 |
| 221 | 264.76 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 237 | 265.07 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 243 | 265.16 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 250 | 265.39 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 262 | 265.56 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 16 |
| 270 | 265.65 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 17 |
| 279 | 265.75 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 326 | 266.53 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 364 | 266.89 | humidity | 90.0 | 10 | < th | dose independent | rect. | 21 | 18 |
| 466 | 268.18 | humidity | 70.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 471 | 268.24 | humidity | 70.0 | 10 | > th | dose independent | rect. | 13 | 8 |
| 606 | 269.54 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 631 | 269.68 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 644 | 269.76 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 13 | 20 |
| 762 | 270.68 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 780 | 270.78 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 794 | 270.88 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 813 | 270.98 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 818 | 271.01 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 13 | 10 |
| 823 | 271.02 | radiation | 10.0 | 30 | < th | dose dependent | no | NA | NA |
| 841 | 271.12 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 15 |
| 845 | 271.13 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 876 | 271.33 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 877 | 271.33 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 919 | 271.58 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 22 |
| 935 | 271.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 959 | 271.80 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 967 | 271.86 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 24 | 10 |
| 991 | 271.96 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 992 | 272.00 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 2 |