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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0463100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cysteinyl-tRNA synthetase, class Ia family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0222) R2 : 0.00906
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0954 (0.0467) R2dN8 : 0.0117 R2N8 : 0.00906
σ : 0.418
deviance : 80.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.09 0.418 2.94 -0.0409 0.0493 -0.0352 -0.0872 0.811 0.1 12.4 62.04 843 -- --
79.62 0.416 2.92 -0.0397 0.0658 0.0983 0.0575 -- 0.101 11.7 68 2782 -- --
79.12 0.414 2.94 -0.0439 0.0503 -0.0335 -- 0.773 0.0995 12.2 62.01 841 -- --
79.41 0.415 2.94 -0.0134 0.0336 0.137 -- -- 0.0921 11.1 68.99 2770 -- --
79.24 0.415 2.95 -0.0521 -- -0.0043 -- 0.768 0.0893 -- 62 1106 -- --
80 0.419 2.94 -0.0288 0.0473 -- 0.0767 -- 0.0925 10.7 -- -- -- --
80.02 0.419 2.94 -0.0254 0.0471 -- -- -- 0.0929 11.3 -- -- -- --
79.47 0.415 2.94 -0.0059 -- 0.146 -- -- 0.0926 -- 68.84 2643 -- --
79.41 0.415 2.94 -- 0.0336 0.139 -- -- 0.0932 10.4 68.21 2769 -- --
80.16 0.418 2.94 -0.0266 -- -- -- -- 0.0925 -- -- -- -- --
80.04 0.418 2.94 -- 0.0474 -- -- -- 0.0957 11.4 -- -- -- --
79.47 0.415 2.94 -- -- 0.146 -- -- 0.0926 -- 68.81 2643 -- --
80.18 0.418 2.94 -- -- -- -- -- 0.0954 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.28 radiation 10.0 1440 < th dose dependent rect. 21 1
5 74.32 temperature 10.0 1440 > th dose independent rect. 21 1
8 74.32 temperature 30.0 1440 < th dose independent rect. 21 1
12 74.32 humidity 50.0 1440 > th dose independent rect. 21 1
18 74.32 atmosphere 995.0 1440 > th dose independent rect. 21 1
19 74.32 radiation 1.0 1440 < th dose independent rect. 21 1
39 74.32 temperature 10.0 1440 > th dose independent rect. 22 23
42 74.39 temperature 25.0 30 > th dose independent rect. 20 1
43 74.39 atmosphere 1005.0 30 > th dose dependent rect. 20 1
46 74.42 wind 3.0 30 > th dose independent rect. 20 1
48 74.43 humidity 80.0 30 > th dose independent rect. 20 1
50 74.43 humidity 90.0 30 < th dose independent rect. 20 1
51 74.43 temperature 20.0 30 > th dose dependent rect. 20 1
55 74.44 atmosphere 1005.0 30 > th dose independent rect. 20 1
60 74.47 wind 1.0 30 > th dose dependent rect. 20 1
62 74.48 wind 5.0 30 < th dose independent rect. 20 1
64 74.48 wind 9.0 1440 < th dose independent rect. 21 1
69 74.50 temperature 10.0 30 > th dose independent rect. 20 1
71 74.50 temperature 30.0 30 < th dose independent rect. 20 1
72 74.50 humidity 50.0 30 > th dose independent rect. 20 1
76 74.50 atmosphere 1010.0 30 < th dose independent rect. 20 1
78 74.50 radiation 1.0 30 < th dose independent rect. 20 1
83 74.50 precipitation 0.1 30 < th dose independent rect. 20 1
84 74.50 temperature 10.0 30 > th dose independent rect. 21 23
85 74.50 humidity 50.0 30 > th dose dependent rect. 20 1
86 74.50 radiation 1.0 30 < th dose dependent rect. 20 1
92 74.50 precipitation 0.1 30 < th dose dependent rect. 20 1
95 74.52 wind 9.0 30 < th dose dependent rect. 20 1
99 74.59 humidity 90.0 30 < th dose dependent rect. 20 1
103 74.64 wind 9.0 30 < th dose independent rect. 21 23
105 74.66 atmosphere 1015.0 30 < th dose dependent rect. 20 1
107 74.72 temperature 30.0 30 < th dose dependent rect. 20 1
161 75.48 temperature 25.0 30 > th dose independent rect. 7 1
175 75.94 precipitation 0.1 30 < th dose independent rect. 21 23
176 75.94 precipitation 0.1 30 < th dose dependent rect. 21 23
184 76.22 atmosphere 995.0 30 > th dose independent rect. 21 23
237 77.01 atmosphere 1015.0 30 < th dose independent rect. 21 23
239 77.01 radiation 10.0 10 < th dose dependent rect. 21 23
240 77.04 temperature 25.0 10 > th dose dependent rect. 7 1
243 77.11 humidity 50.0 30 > th dose independent rect. 21 23
244 77.15 humidity 80.0 10 < th dose independent rect. 1 7
246 77.18 humidity 80.0 10 < th dose independent rect. 7 1
262 77.42 temperature 25.0 10 > th dose dependent rect. 20 12
267 77.52 radiation 10.0 30 > th dose independent rect. 7 1
294 77.75 precipitation 0.1 1440 < th dose independent rect. 21 1
295 77.75 precipitation 0.1 1440 < th dose dependent rect. 21 1
305 77.86 wind 5.0 10 < th dose independent rect. 20 14
313 77.94 temperature 25.0 30 > th dose dependent rect. 20 4
319 77.97 temperature 30.0 10 < th dose independent rect. 21 23
342 78.08 radiation 20.0 30 < th dose independent rect. 20 13
348 78.10 radiation 10.0 10 < th dose independent rect. 21 23
352 78.12 temperature 15.0 10 > th dose dependent rect. 20 4
355 78.13 atmosphere 1010.0 30 < th dose dependent rect. 6 1
356 78.14 wind 5.0 30 < th dose independent rect. 20 12
361 78.16 atmosphere 1010.0 30 < th dose independent rect. 6 1
363 78.17 humidity 70.0 30 > th dose independent rect. 20 14
368 78.19 radiation 10.0 30 < th dose independent rect. 6 1
370 78.19 wind 1.0 10 > th dose independent rect. 8 12
379 78.23 temperature 25.0 30 > th dose independent rect. 20 4
383 78.23 temperature 30.0 10 < th dose independent rect. 20 14
385 78.24 humidity 80.0 10 > th dose independent rect. 20 4
389 78.26 temperature 25.0 30 > th dose independent rect. 20 12
395 78.28 humidity 60.0 720 > th dose independent rect. 8 1
402 78.28 temperature 10.0 30 > th dose dependent rect. 21 23
408 78.29 radiation 40.0 30 < th dose dependent rect. 20 14
432 78.32 wind 5.0 10 < th dose independent rect. 20 4
445 78.34 temperature 25.0 30 > th dose independent rect. 20 19
455 78.37 atmosphere 1010.0 10 < th dose independent rect. 20 4
457 78.37 radiation 40.0 10 < th dose independent rect. 20 12
463 78.38 temperature 10.0 10 > th dose independent rect. 8 12
465 78.38 temperature 10.0 10 > th dose independent rect. 20 12
466 78.38 temperature 30.0 10 < th dose independent rect. 20 12
467 78.38 humidity 50.0 10 > th dose independent rect. 20 12
469 78.38 atmosphere 995.0 10 > th dose independent rect. 20 12
470 78.38 atmosphere 1015.0 10 < th dose independent rect. 8 12
472 78.38 temperature 25.0 30 > th dose independent rect. 20 14
476 78.39 precipitation 0.1 10 < th dose independent rect. 8 12
478 78.39 precipitation 0.1 10 < th dose dependent rect. 8 12
479 78.40 wind 7.0 720 < th dose independent rect. 8 1
493 78.40 wind 9.0 10 < th dose independent rect. 10 10
494 78.40 wind 9.0 10 < th dose independent rect. 8 12
504 78.40 precipitation 0.1 30 < th dose independent rect. 20 12
509 78.40 wind 9.0 720 < th dose dependent rect. 20 1
515 78.40 precipitation 0.1 30 < th dose dependent rect. 20 12
517 78.41 temperature 10.0 720 > th dose independent rect. 8 1
520 78.41 atmosphere 995.0 720 > th dose independent rect. 8 1
521 78.41 atmosphere 1015.0 720 < th dose independent rect. 8 1
522 78.41 precipitation 0.1 720 < th dose independent rect. 8 1
524 78.41 temperature 10.0 10 > th dose independent rect. 10 10
526 78.41 atmosphere 1015.0 10 < th dose independent rect. 10 10
527 78.41 temperature 10.0 1440 > th dose independent rect. 9 12
530 78.41 temperature 10.0 1440 > th dose independent rect. 21 12
533 78.41 humidity 50.0 1440 > th dose independent rect. 21 12
535 78.41 atmosphere 995.0 1440 > th dose independent rect. 21 12
537 78.41 temperature 10.0 10 > th dose independent rect. 20 14
538 78.41 humidity 50.0 10 > th dose independent rect. 20 14
539 78.41 atmosphere 995.0 10 > th dose independent rect. 20 14
541 78.41 temperature 10.0 720 > th dose independent rect. 9 23
542 78.41 precipitation 0.1 720 < th dose dependent rect. 8 1
572 78.43 precipitation 0.1 10 < th dose independent rect. 10 10
577 78.43 precipitation 0.1 10 < th dose dependent rect. 10 10
587 78.46 humidity 60.0 720 > th dose independent rect. 24 9
594 78.46 atmosphere 1010.0 30 < th dose independent rect. 20 14
598 78.46 wind 9.0 10 < th dose dependent rect. 20 14
651 78.48 wind 3.0 30 > th dose dependent rect. 6 1
656 78.49 temperature 15.0 10 > th dose independent rect. 20 4
657 78.49 atmosphere 1005.0 30 > th dose independent rect. 20 4
673 78.50 precipitation 0.1 10 < th dose independent rect. 20 4
676 78.50 atmosphere 1010.0 30 < th dose independent rect. 20 12
677 78.50 precipitation 0.1 10 < th dose independent rect. 20 14
685 78.50 precipitation 0.1 10 < th dose dependent rect. 20 4
687 78.50 precipitation 0.1 10 < th dose dependent rect. 20 14
718 78.52 wind 1.0 720 > th dose independent rect. 20 1
735 78.52 wind 9.0 10 < th dose independent rect. 24 20
747 78.53 radiation 1.0 720 > th dose independent rect. 8 1
752 78.53 temperature 30.0 10 < th dose independent rect. 20 4
753 78.53 humidity 50.0 10 > th dose independent rect. 20 4
756 78.53 atmosphere 995.0 10 > th dose independent rect. 20 4
757 78.53 radiation 1.0 10 < th dose independent rect. 20 4
762 78.53 temperature 10.0 1440 > th dose independent rect. 11 10
768 78.53 temperature 10.0 1440 > th dose independent rect. 21 14
771 78.53 atmosphere 995.0 1440 > th dose independent rect. 21 14
772 78.53 temperature 10.0 10 > th dose independent rect. 24 20
775 78.53 radiation 1.0 10 < th dose dependent rect. 20 4
785 78.54 precipitation 0.1 10 < th dose independent rect. 24 20
786 78.54 wind 3.0 10 < th dose dependent rect. 7 1
790 78.54 radiation 1.0 1440 < th dose dependent rect. 21 4
791 78.54 temperature 10.0 10 > th dose dependent rect. 20 6
794 78.54 precipitation 0.1 10 < th dose dependent rect. 24 20
797 78.55 wind 1.0 720 > th dose independent rect. 8 1
824 78.55 atmosphere 1015.0 10 < th dose independent rect. 24 20
834 78.56 temperature 10.0 1440 > th dose independent rect. 21 4
837 78.56 temperature 30.0 1440 < th dose independent rect. 21 4
841 78.56 humidity 50.0 1440 > th dose independent rect. 21 4
847 78.56 atmosphere 995.0 1440 > th dose independent rect. 21 4
848 78.56 radiation 1.0 1440 < th dose independent rect. 21 4
871 78.56 atmosphere 995.0 10 > th dose independent rect. 8 12
873 78.56 temperature 10.0 1440 > th dose independent rect. 1 20
889 78.56 temperature 10.0 30 > th dose dependent rect. 20 12
897 78.57 wind 9.0 720 < th dose independent rect. 24 9
898 78.57 temperature 10.0 720 > th dose independent rect. 24 9
900 78.57 atmosphere 995.0 720 > th dose independent rect. 24 9
901 78.57 atmosphere 995.0 10 > th dose independent rect. 10 10
904 78.57 temperature 10.0 720 > th dose independent rect. 9 15
909 78.58 radiation 40.0 720 < th dose independent rect. 8 1
911 78.58 wind 5.0 10 < th dose independent rect. 20 6
912 78.58 wind 1.0 10 > th dose independent rect. 20 12
922 78.59 atmosphere 995.0 10 > th dose independent rect. 24 20
938 78.61 temperature 10.0 720 > th dose dependent rect. 8 1
939 78.61 wind 9.0 10 < th dose dependent rect. 20 4
967 78.64 wind 9.0 10 < th dose independent rect. 15 5
968 78.64 atmosphere 1010.0 10 < th dose independent rect. 20 6
970 78.64 radiation 40.0 720 < th dose independent rect. 15 18
971 78.64 wind 9.0 10 < th dose independent rect. 20 19
973 78.64 temperature 15.0 30 > th dose independent rect. 20 19
975 78.64 atmosphere 995.0 10 > th dose dependent rect. 20 4
979 78.65 atmosphere 1005.0 10 > th dose independent rect. 7 1
980 78.65 wind 1.0 10 > th dose independent rect. 15 5
982 78.65 temperature 10.0 1440 > th dose independent rect. 16 5
985 78.65 radiation 40.0 30 < th dose independent rect. 15 5
990 78.65 temperature 10.0 1440 > th dose independent rect. 21 19
994 78.65 temperature 10.0 30 > th dose dependent rect. 15 5
995 78.65 humidity 90.0 30 < th dose dependent rect. 20 12