FiT-DB / Search/ Help/ Sample detail

Os10g0462500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0237) R2 : 0.349
β1 : 1.02 (0.0867) R2dD : 0.206 R2D : 0.0587
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.622 (0.0505) R2dN8 : 0.29 R2N8 : 0.143
σ : 0.444
deviance : 90.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.23 0.359 11.8 -0.623 0.477 -0.493 0.437 9.98 0.307 4.35 29.69 1967 -- --
71.14 0.393 11.6 0.76 0.516 -0.542 0.497 -- 0.482 4.69 18 4790 -- --
58.5 0.356 11.8 -0.655 0.481 -0.526 -- 10.1 0.304 4.47 29.7 2060 -- --
71.77 0.395 11.6 0.794 0.512 -0.605 -- -- 0.506 4.5 17.4 4716 -- --
70.7 0.392 11.8 -0.579 -- -0.425 -- 9.83 0.322 -- 29.67 2060 -- --
78.32 0.415 11.6 1.01 0.455 -- 0.577 -- 0.613 4.61 -- -- -- --
79.2 0.417 11.6 1 0.459 -- -- -- 0.61 4.66 -- -- -- --
68.35 0.385 11.6 1.14 -- 0.823 -- -- 0.607 -- 29.7 327 -- --
72.42 0.396 11.7 -- 0.448 -0.964 -- -- 0.341 4.72 16.08 39180 -- --
90.42 0.444 11.6 1.02 -- -- -- -- 0.622 -- -- -- -- --
105.79 0.481 11.6 -- 0.478 -- -- -- 0.498 4.6 -- -- -- --
82.69 0.424 11.7 -- -- -1.07 -- -- 0.359 -- 14.89 41569 -- --
117.96 0.507 11.6 -- -- -- -- -- 0.509 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.50 precipitation 0.1 43200 > th dose dependent rect. 17 5
2 52.51 precipitation 0.1 43200 > th dose dependent rect. 14 7
3 52.70 precipitation 0.1 43200 > th dose dependent rect. 14 4
5 52.82 precipitation 0.1 43200 < th dose independent rect. 17 4
6 52.82 precipitation 0.1 43200 < th dose dependent rect. 17 4
12 53.03 precipitation 0.1 43200 > th dose independent rect. 17 4
35 54.09 precipitation 0.1 43200 < th dose independent rect. 15 3
36 54.09 precipitation 0.1 43200 < th dose dependent rect. 15 3
44 54.19 precipitation 0.1 43200 > th dose independent rect. 15 3
45 54.20 precipitation 0.1 43200 < th dose independent rect. 20 1
46 54.20 precipitation 0.1 43200 < th dose dependent rect. 20 1
58 54.48 precipitation 0.1 43200 > th dose independent rect. 20 1
59 54.54 radiation 10.0 43200 > th dose independent rect. 8 1
61 54.55 wind 9.0 43200 < th dose independent rect. 16 21
62 54.59 wind 7.0 43200 > th dose independent rect. 17 21
66 54.66 precipitation 0.1 43200 > th dose dependent rect. 18 3
67 54.67 precipitation 0.1 43200 > th dose dependent rect. 20 1
83 54.85 wind 7.0 43200 < th dose independent rect. 20 19
93 54.93 wind 7.0 43200 > th dose independent rect. 8 6
98 54.99 wind 7.0 43200 > th dose independent rect. 3 12
102 55.04 radiation 10.0 43200 > th dose independent rect. 7 3
107 55.07 wind 7.0 43200 < th dose independent rect. 3 12
113 55.12 wind 7.0 43200 < th dose independent rect. 8 6
116 55.13 wind 7.0 43200 > th dose dependent rect. 17 21
118 55.14 wind 7.0 43200 > th dose independent rect. 4 10
135 55.26 wind 9.0 43200 < th dose independent sin 12 NA
139 55.26 wind 9.0 43200 > th dose dependent rect. 14 17
141 55.31 wind 9.0 43200 > th dose independent rect. 14 23
166 55.49 wind 7.0 43200 > th dose dependent rect. 19 20
205 55.60 wind 9.0 43200 > th dose independent sin 12 NA
210 55.63 wind 7.0 43200 > th dose independent sin 4 NA
224 55.69 precipitation 0.1 43200 > th dose dependent sin 18 NA
235 55.73 wind 7.0 43200 < th dose independent sin 4 NA
248 55.77 wind 7.0 43200 > th dose dependent rect. 17 13
252 55.78 wind 7.0 43200 > th dose dependent sin 11 NA
257 55.81 temperature 20.0 14400 > th dose independent rect. 20 5
260 55.83 radiation 20.0 43200 > th dose independent rect. 10 2
262 55.84 wind 9.0 43200 < th dose independent rect. 17 14
274 55.89 wind 9.0 43200 < th dose independent rect. 19 23
280 55.91 wind 5.0 43200 > th dose dependent rect. 3 12
285 55.93 atmosphere 1005.0 43200 < th dose dependent rect. 3 2
294 55.98 radiation 20.0 43200 < th dose dependent rect. 10 1
302 56.01 wind 5.0 43200 > th dose dependent rect. 10 4
319 56.07 atmosphere 1005.0 43200 < th dose dependent rect. 21 8
333 56.09 wind 7.0 43200 > th dose independent rect. 19 11
336 56.09 wind 7.0 43200 > th dose dependent rect. 19 11
350 56.12 wind 7.0 43200 < th dose independent rect. 19 12
352 56.12 wind 1.0 43200 < th dose dependent rect. 5 2
455 56.20 wind 5.0 43200 > th dose dependent sin 4 NA
461 56.21 atmosphere 1005.0 43200 < th dose dependent sin 13 NA
472 56.23 atmosphere 1000.0 43200 < th dose independent rect. 2 2
480 56.23 wind 9.0 43200 > th dose dependent rect. 14 4
490 56.25 temperature 20.0 14400 < th dose independent rect. 20 5
496 56.26 temperature 20.0 14400 > th dose independent rect. 21 2
514 56.28 atmosphere 1005.0 43200 < th dose dependent rect. 23 1
543 56.31 wind 9.0 43200 < th dose independent rect. 14 18
560 56.33 wind 9.0 43200 > th dose independent rect. 14 18
583 56.37 atmosphere 1000.0 43200 > th dose independent rect. 20 1
593 56.37 wind 9.0 43200 < th dose independent rect. 9 23
606 56.38 wind 7.0 43200 > th dose independent rect. 11 1
609 56.38 atmosphere 1005.0 43200 < th dose dependent rect. 19 1
620 56.40 atmosphere 1000.0 43200 > th dose independent rect. 2 2
623 56.40 wind 9.0 43200 > th dose independent rect. 17 14
624 56.40 wind 9.0 43200 < th dose independent rect. 1 23
629 56.41 temperature 20.0 14400 < th dose independent rect. 21 2
632 56.41 wind 9.0 43200 < th dose independent rect. 3 21
634 56.41 wind 9.0 43200 < th dose independent rect. 3 23
639 56.42 wind 9.0 43200 < th dose independent no NA NA
688 56.47 wind 7.0 43200 > th dose dependent rect. 11 1
757 56.54 radiation 10.0 43200 > th dose independent sin 7 NA
993 56.78 atmosphere 1000.0 43200 > th dose independent rect. 20 8
994 56.78 atmosphere 1000.0 43200 < th dose independent rect. 20 8