Os10g0462200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0462200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.79 | 0.357 | 11.4 | 1.07 | 1.37 | -0.861 | 0.203 | 0.0927 | 0.764 | 23.8 | 25.5 | 98 | -- | -- |
| 57.8 | 0.354 | 11.4 | 1.06 | 1.37 | -0.853 | 0.198 | -- | 0.76 | 23.8 | 25.54 | 98 | -- | -- |
| 57.96 | 0.355 | 11.4 | 1.04 | 1.37 | -0.851 | -- | -0.109 | 0.759 | 23.8 | 25.48 | 97 | -- | -- |
| 57.96 | 0.355 | 11.4 | 1.05 | 1.37 | -0.861 | -- | -- | 0.76 | 23.8 | 25.5 | 98 | -- | -- |
| 143.24 | 0.557 | 11.3 | 1.37 | -- | -1.89 | -- | 1.11 | 0.943 | -- | 24.6 | 2 | -- | -- |
| 69.4 | 0.391 | 11.4 | 0.931 | 1.57 | -- | 0.354 | -- | 0.712 | 0.502 | -- | -- | -- | -- |
| 69.94 | 0.392 | 11.4 | 0.917 | 1.57 | -- | -- | -- | 0.711 | 0.496 | -- | -- | -- | -- |
| 143.94 | 0.559 | 11.3 | 1.22 | -- | -1.81 | -- | -- | 0.899 | -- | 24.6 | 2 | -- | -- |
| 86 | 0.432 | 11.4 | -- | 1.45 | -0.619 | -- | -- | 0.63 | 0.00356 | 25.68 | 115 | -- | -- |
| 224.38 | 0.7 | 11.4 | 0.972 | -- | -- | -- | -- | 0.737 | -- | -- | -- | -- | -- |
| 92.12 | 0.449 | 11.4 | -- | 1.58 | -- | -- | -- | 0.608 | 0.525 | -- | -- | -- | -- |
| 182.54 | 0.629 | 11.4 | -- | -- | -1.61 | -- | -- | 0.77 | -- | 24.63 | 2 | -- | -- |
| 249.28 | 0.737 | 11.4 | -- | -- | -- | -- | -- | 0.629 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 2 | 57.54 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 4 | 57.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 24 | 20 |
| 12 | 57.65 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 29 | 57.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 71 | 57.97 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 90 | 58.03 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 117 | 58.11 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 151 | 58.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 171 | 58.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 225 | 58.40 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 299 | 58.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 377 | 58.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 424 | 58.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 437 | 58.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 446 | 59.01 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 454 | 59.04 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 13 |
| 459 | 59.05 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 22 |
| 460 | 59.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 467 | 59.06 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 469 | 59.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 482 | 59.08 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 506 | 59.11 | radiation | 40 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 520 | 59.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 529 | 59.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 553 | 59.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 554 | 59.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 12 |
| 555 | 59.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 567 | 59.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 568 | 59.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 585 | 59.26 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 592 | 59.27 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 645 | 59.31 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 4 |
| 675 | 59.31 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 23 |
| 682 | 59.32 | temperature | 30 | 1440 | > th | dose independent | sin | 20 | NA |
| 701 | 59.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 725 | 59.36 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 18 |
| 729 | 59.37 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 738 | 59.38 | temperature | 30 | 1440 | < th | dose independent | sin | 23 | NA |
| 757 | 59.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 780 | 59.39 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 21 |
| 787 | 59.40 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 896 | 59.41 | radiation | 20 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 923 | 59.43 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 936 | 59.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 949 | 59.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 990 | 59.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |