Os10g0461400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0461400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.2 | 0.275 | 13.3 | -1.01 | 1.26 | -2.72 | 0.232 | -9.42 | -0.433 | 22.2 | 7.192 | 273 | -- | -- |
| 37.81 | 0.286 | 13.4 | -0.931 | 1.32 | -0.53 | 0.343 | -- | -0.438 | 22.2 | 5.259 | 595 | -- | -- |
| 34.4 | 0.273 | 13.3 | -1.01 | 1.26 | -2.84 | -- | -9.88 | -0.431 | 22.2 | 7.273 | 271 | -- | -- |
| 37.98 | 0.287 | 13.4 | -0.927 | 1.34 | -0.553 | -- | -- | -0.451 | 22.1 | 4.546 | 563 | -- | -- |
| 128.48 | 0.528 | 13.3 | -0.946 | -- | -2.61 | -- | -8.17 | -0.436 | -- | 7.9 | 145 | -- | -- |
| 39.44 | 0.294 | 13.3 | -0.859 | 1.24 | -- | 0.377 | -- | -0.434 | 22.3 | -- | -- | -- | -- |
| 40.01 | 0.296 | 13.3 | -0.874 | 1.24 | -- | -- | -- | -0.435 | 22.3 | -- | -- | -- | -- |
| 113.63 | 0.496 | 13.3 | -0.6 | -- | 1.24 | -- | -- | -0.466 | -- | 0.3699 | 709 | -- | -- |
| 58.89 | 0.359 | 13.3 | -- | 1.24 | 0.31 | -- | -- | -0.335 | 22.4 | 4.862 | 811 | -- | -- |
| 133.5 | 0.54 | 13.3 | -0.855 | -- | -- | -- | -- | -0.432 | -- | -- | -- | -- | -- |
| 60.15 | 0.363 | 13.3 | -- | 1.24 | -- | -- | -- | -0.338 | 22.2 | -- | -- | -- | -- |
| 121.68 | 0.514 | 13.3 | -- | -- | 1.46 | -- | -- | -0.412 | -- | -0.854 | 710 | -- | -- |
| 152.8 | 0.577 | 13.3 | -- | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.06 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 3 | 32.35 | wind | 5 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 6 | 32.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 7 | 32.45 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 13 | 32.59 | wind | 7 | 720 | > th | dose independent | rect. | 7 | 3 |
| 21 | 32.65 | temperature | 25 | 270 | < th | dose dependent | sin | 22 | NA |
| 22 | 32.66 | wind | 5 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 76 | 33.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 79 | 33.07 | wind | 7 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 81 | 33.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 102 | 33.14 | wind | 7 | 720 | > th | dose independent | rect. | 1 | 12 |
| 112 | 33.17 | wind | 5 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 115 | 33.17 | wind | 7 | 720 | > th | dose independent | rect. | 3 | 10 |
| 119 | 33.17 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 133 | 33.20 | temperature | 25 | 10 | < th | dose dependent | sin | 20 | NA |
| 134 | 33.21 | wind | 7 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 136 | 33.21 | wind | 7 | 720 | > th | dose independent | rect. | 20 | 17 |
| 163 | 33.27 | wind | 7 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 203 | 33.35 | wind | 5 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 219 | 33.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 238 | 33.42 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 344 | 33.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 370 | 33.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 376 | 33.70 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 379 | 33.70 | wind | 7 | 270 | > th | dose independent | rect. | 17 | 21 |
| 399 | 33.72 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 447 | 33.78 | wind | 5 | 720 | > th | dose dependent | sin | 6 | NA |
| 452 | 33.79 | wind | 7 | 720 | > th | dose independent | sin | 7 | NA |
| 468 | 33.81 | wind | 7 | 720 | < th | dose independent | sin | 8 | NA |
| 494 | 33.84 | wind | 5 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 503 | 33.86 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 571 | 33.92 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 623 | 33.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 14 |
| 624 | 33.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 711 | 34.04 | wind | 7 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 750 | 34.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 755 | 34.09 | wind | 7 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 780 | 34.13 | radiation | 1 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 783 | 34.13 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 815 | 34.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 821 | 34.15 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 830 | 34.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 836 | 34.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 837 | 34.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 842 | 34.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 871 | 34.19 | wind | 5 | 270 | < th | dose independent | rect. | 23 | 16 |
| 887 | 34.20 | radiation | 1 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 903 | 34.20 | wind | 7 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 924 | 34.22 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 994 | 34.25 | wind | 7 | 270 | > th | dose dependent | rect. | 1 | 23 |