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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0459700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0298) R2 : 0.174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.72 (0.379) R2dE : 0.175 R2E : 0.173
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0446 (0.0629) R2dN8 : 0.00118 R2N8 : -0.000553
σ : 0.56
deviance : 144.75
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.37
memory length : 281
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 1.48

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
140.64 0.557 2.79 0.339 0.122 4.99 -0.00766 2.68 0.0884 1.16 23.43 281 12 1.63
141.75 0.555 2.77 0.427 0.0769 4.13 0.114 -- 0.116 23.4 23.31 281 12 1.7
139.88 0.551 2.79 0.315 0.118 5.34 -- 3.6 0.074 0.847 23.29 286 12 1.61
141.26 0.554 2.78 0.361 0.114 3.96 -- -- 0.083 0.837 23.37 282 12 1.62
140.37 0.552 2.78 0.354 -- 6.02 -- 4.89 0.0848 -- 23.19 284 12 1.55
173.82 0.618 2.79 0.192 0.0591 -- -0.365 -- 0.033 17 -- -- -- --
173.94 0.618 2.8 0.19 0.0841 -- -- -- 0.0309 19.9 -- -- -- --
141.95 0.555 2.78 0.342 -- 3.88 -- -- 0.0859 -- 23.33 282 12 1.63
144.15 0.559 2.79 -- 0.114 3.87 -- -- 0.0521 0.982 23.33 282 12.1 1.57
174.33 0.617 2.79 0.189 -- -- -- -- 0.0297 -- -- -- -- --
174.89 0.619 2.8 -- 0.0829 -- -- -- 0.00974 20.1 -- -- -- --
144.75 0.56 2.79 -- -- 3.72 -- -- 0.0446 -- 23.37 281 12.1 1.48
175.26 0.618 2.8 -- -- -- -- -- 0.00881 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.49 temperature 25.0 270 < th dose dependent rect. 12 2
2 145.55 temperature 25.0 30 < th dose dependent rect. 12 4
3 145.57 temperature 20.0 10 < th dose independent rect. 12 5
6 145.62 temperature 20.0 270 < th dose independent rect. 12 1
7 145.63 temperature 20.0 90 < th dose independent rect. 12 3
29 148.29 radiation 1.0 90 < th dose independent rect. 13 2
30 148.29 radiation 1.0 90 < th dose dependent rect. 13 2
52 152.67 temperature 20.0 10 < th dose independent rect. 10 7
97 155.19 atmosphere 1015.0 4320 > th dose dependent rect. 16 5
109 155.53 wind 5.0 10 > th dose dependent rect. 21 1
110 155.53 humidity 80.0 10 < th dose dependent rect. 22 1
126 155.70 wind 5.0 10 > th dose independent rect. 21 1
150 156.38 temperature 20.0 10 < th dose dependent rect. 10 6
164 156.95 humidity 80.0 10 < th dose independent rect. 21 1
202 157.83 temperature 20.0 270 < th dose independent rect. 10 9
214 158.10 temperature 20.0 30 < th dose independent rect. 12 10
215 158.11 temperature 15.0 720 < th dose independent rect. 4 1
223 158.11 temperature 15.0 720 < th dose dependent rect. 4 1
239 158.15 humidity 50.0 4320 < th dose independent rect. 10 1
240 158.15 humidity 50.0 4320 < th dose dependent rect. 10 1
294 158.58 radiation 10.0 1440 < th dose dependent rect. 11 1
297 158.62 radiation 1.0 1440 > th dose independent rect. 15 2
298 158.62 radiation 1.0 1440 < th dose independent rect. 15 2
300 158.64 radiation 10.0 1440 < th dose dependent rect. 10 10
302 158.65 radiation 10.0 1440 < th dose dependent rect. 10 13
312 158.70 atmosphere 1015.0 4320 > th dose independent rect. 16 5
326 158.74 atmosphere 1015.0 4320 > th dose independent rect. 14 6
328 158.82 temperature 25.0 10 < th dose dependent rect. 16 1
340 158.90 radiation 10.0 1440 < th dose independent rect. 11 1
344 158.92 humidity 90.0 10 > th dose independent rect. 17 1
354 158.92 humidity 90.0 10 > th dose dependent rect. 17 1
375 158.99 precipitation 0.1 90 > th dose independent rect. 17 1
378 158.99 precipitation 0.1 90 > th dose dependent rect. 17 1
388 159.04 precipitation 0.1 10 > th dose independent rect. 17 1
416 159.04 precipitation 0.1 10 > th dose dependent rect. 17 1
447 159.08 atmosphere 1015.0 4320 < th dose independent rect. 16 5
472 159.31 humidity 80.0 10 > th dose independent rect. 12 5
475 159.33 radiation 10.0 1440 < th dose dependent sin 17 NA
478 159.34 radiation 1.0 1440 > th dose independent rect. 11 6
479 159.34 radiation 1.0 1440 < th dose independent rect. 15 8
481 159.34 radiation 1.0 1440 < th dose independent rect. 15 13
498 159.38 radiation 1.0 43200 < th dose dependent rect. 3 1
499 159.39 radiation 10.0 1440 < th dose independent rect. 10 20
503 159.42 radiation 10.0 1440 < th dose independent rect. 10 10
509 159.43 radiation 10.0 1440 < th dose independent rect. 10 17
566 159.63 precipitation 0.1 720 > th dose independent rect. 22 1
568 159.63 precipitation 0.1 720 > th dose dependent rect. 22 1
614 159.76 radiation 1.0 1440 > th dose independent rect. 15 14
674 159.81 temperature 25.0 1440 < th dose dependent rect. 13 1
784 160.06 atmosphere 1015.0 4320 > th dose independent rect. 16 1
788 160.06 atmosphere 1015.0 4320 > th dose dependent rect. 16 1
800 160.08 radiation 1.0 1440 < th dose independent sin 18 NA
822 160.13 radiation 1.0 1440 > th dose independent rect. 11 18
851 160.17 temperature 20.0 10 < th dose dependent rect. 22 1
866 160.20 radiation 20.0 1440 < th dose independent rect. 17 3
924 160.41 precipitation 0.1 1440 > th dose independent rect. 17 1
925 160.41 humidity 90.0 1440 < th dose independent rect. 14 4
932 160.45 radiation 1.0 1440 > th dose independent sin 18 NA
958 160.47 radiation 10.0 1440 > th dose independent rect. 11 1
973 160.52 atmosphere 1015.0 4320 > th dose dependent sin 16 NA