Os10g0457200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os10g0457200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.34 | 0.538 | 6.64 | 0.428 | 1.32 | 1.33 | 1.39 | 1.77 | -0.511 | 19 | 33.56 | 123 | -- | -- |
| 134.08 | 0.539 | 6.62 | 0.431 | 1.31 | 1.09 | 1.26 | -- | -0.496 | 18.9 | 33.34 | 125 | -- | -- |
| 136.26 | 0.544 | 6.63 | 0.42 | 1.32 | 1.38 | -- | 1.65 | -0.505 | 19 | 35.75 | 127 | -- | -- |
| 138.45 | 0.548 | 6.62 | 0.417 | 1.33 | 1.14 | -- | -- | -0.494 | 18.9 | 34.67 | 125 | -- | -- |
| 157.71 | 0.585 | 6.62 | 0.329 | -- | 1.4 | -- | 1.47 | -0.634 | -- | 30.13 | 701 | -- | -- |
| 148.05 | 0.57 | 6.61 | 0.367 | 1.35 | -- | 1.39 | -- | -0.467 | 18.2 | -- | -- | -- | -- |
| 152.8 | 0.579 | 6.61 | 0.352 | 1.36 | -- | -- | -- | -0.462 | 18.2 | -- | -- | -- | -- |
| 157.3 | 0.584 | 6.62 | 0.239 | -- | 1.59 | -- | -- | -0.64 | -- | -1.73 | 692 | -- | -- |
| 141.44 | 0.554 | 6.64 | -- | 1.25 | 0.984 | -- | -- | -0.57 | 19.1 | 30 | 211 | -- | -- |
| 248.41 | 0.736 | 6.59 | 0.314 | -- | -- | -- | -- | -0.492 | -- | -- | -- | -- | -- |
| 156.06 | 0.584 | 6.62 | -- | 1.35 | -- | -- | -- | -0.501 | 18.2 | -- | -- | -- | -- |
| 158.8 | 0.587 | 6.63 | -- | -- | 1.6 | -- | -- | -0.668 | -- | -2.166 | 693 | -- | -- |
| 251.02 | 0.74 | 6.6 | -- | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.54 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 2 | 128.72 | radiation | 40 | 720 | > th | dose independent | rect. | 8 | 4 |
| 19 | 128.76 | radiation | 30 | 270 | > th | dose dependent | sin | 8 | NA |
| 24 | 128.95 | radiation | 30 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 25 | 128.98 | radiation | 30 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 43 | 129.02 | radiation | 30 | 270 | > th | dose dependent | sin | 11 | NA |
| 65 | 129.24 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 66 | 129.30 | radiation | 40 | 270 | > th | dose independent | sin | 9 | NA |
| 128 | 130.29 | radiation | 40 | 270 | < th | dose independent | sin | 9 | NA |
| 148 | 130.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 216 | 130.71 | radiation | 40 | 720 | < th | dose independent | rect. | 20 | 15 |
| 267 | 130.92 | radiation | 40 | 720 | < th | dose independent | rect. | 4 | 7 |
| 442 | 131.64 | radiation | 40 | 720 | < th | dose independent | rect. | 2 | 9 |
| 445 | 131.67 | radiation | 40 | 270 | < th | dose independent | rect. | 19 | 23 |
| 495 | 132.14 | radiation | 30 | 90 | > th | dose dependent | sin | 0 | NA |
| 497 | 132.14 | radiation | 30 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 513 | 132.16 | radiation | 30 | 90 | > th | dose dependent | no | NA | NA |
| 814 | 132.51 | radiation | 40 | 90 | > th | dose independent | sin | 1 | NA |
| 904 | 132.74 | radiation | 40 | 90 | > th | dose independent | no | NA | NA |