Os10g0456600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ras GTPase family protein.
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Os10g0456600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ras GTPase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.12 | 0.439 | 9.23 | -2.19 | 1.05 | 1.06 | 0.727 | -2.98 | -0.339 | 0.44 | 26.6 | 949 | -- | -- |
| 88.41 | 0.438 | 9.15 | -1.65 | 1.09 | 0.709 | 0.607 | -- | -0.199 | 0.239 | 27.91 | 968 | -- | -- |
| 88.86 | 0.439 | 9.24 | -2.29 | 1.07 | 0.971 | -- | -2.85 | -0.331 | 24 | 27.08 | 1127 | -- | -- |
| 89.92 | 0.442 | 9.16 | -1.69 | 1.08 | 0.734 | -- | -- | -0.197 | 0.263 | 27.82 | 970 | -- | -- |
| 149.24 | 0.569 | 9.24 | -2.39 | -- | 1.5 | -- | -2.85 | -0.475 | -- | 24.96 | 976 | -- | -- |
| 104 | 0.478 | 9.17 | -1.48 | 1.22 | -- | 0.759 | -- | -0.228 | 24 | -- | -- | -- | -- |
| 106.5 | 0.483 | 9.17 | -1.51 | 1.21 | -- | -- | -- | -0.231 | 24 | -- | -- | -- | -- |
| 152.24 | 0.575 | 9.16 | -1.81 | -- | 1.2 | -- | -- | -0.308 | -- | 25.01 | 956 | -- | -- |
| 159.62 | 0.588 | 9.12 | -- | 1.14 | 0.415 | -- | -- | -0.0331 | 0.167 | 32.4 | 878 | -- | -- |
| 199.03 | 0.659 | 9.14 | -1.47 | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
| 166.47 | 0.604 | 9.13 | -- | 1.19 | -- | -- | -- | -0.0635 | 23.9 | -- | -- | -- | -- |
| 228.38 | 0.706 | 9.09 | -- | -- | -1.05 | -- | -- | 0.00773 | -- | 25.01 | 956 | -- | -- |
| 256.12 | 0.747 | 9.11 | -- | -- | -- | -- | -- | -0.0516 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.53 | temperature | 15 | 90 | > th | dose dependent | rect. | 16 | 13 |
| 5 | 82.89 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 6 | 83.05 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 17 | 83.19 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 20 | 83.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 22 | 83.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 88 | 85.80 | radiation | 10 | 720 | > th | dose independent | rect. | 17 | 1 |
| 122 | 86.32 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 125 | 86.38 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 141 | 86.47 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 18 |
| 159 | 86.72 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 13 |
| 179 | 86.86 | wind | 9 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 186 | 86.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 193 | 86.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 198 | 86.99 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 206 | 87.07 | wind | 9 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 221 | 87.17 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 229 | 87.25 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 230 | 87.26 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 236 | 87.27 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 243 | 87.31 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 11 |
| 245 | 87.32 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 252 | 87.35 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 258 | 87.39 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 10 |
| 267 | 87.44 | wind | 7 | 43200 | > th | dose dependent | sin | 2 | NA |
| 271 | 87.45 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 17 |
| 274 | 87.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 21 |
| 285 | 87.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 293 | 87.52 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 304 | 87.57 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 3 |
| 329 | 87.59 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 335 | 87.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 9 | 14 |
| 344 | 87.63 | wind | 9 | 43200 | > th | dose dependent | rect. | 9 | 16 |
| 347 | 87.64 | wind | 9 | 43200 | > th | dose dependent | rect. | 9 | 18 |
| 351 | 87.66 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 364 | 87.70 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 10 |
| 380 | 87.75 | temperature | 30 | 720 | > th | dose independent | sin | 12 | NA |
| 383 | 87.76 | humidity | 60 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 390 | 87.77 | humidity | 60 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 396 | 87.79 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 15 |
| 397 | 87.79 | wind | 9 | 43200 | > th | dose dependent | sin | 20 | NA |
| 431 | 87.84 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 434 | 87.84 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 443 | 87.88 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 474 | 87.92 | wind | 7 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 476 | 87.93 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 481 | 87.94 | wind | 9 | 43200 | < th | dose independent | sin | 3 | NA |
| 482 | 87.94 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 486 | 87.94 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 535 | 88.02 | wind | 9 | 43200 | > th | dose independent | rect. | 23 | 22 |
| 540 | 88.03 | wind | 3 | 43200 | > th | dose dependent | sin | 1 | NA |
| 560 | 88.07 | wind | 9 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 562 | 88.07 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 22 |
| 581 | 88.09 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 599 | 88.12 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 604 | 88.13 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 608 | 88.14 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 641 | 88.19 | wind | 9 | 43200 | > th | dose independent | sin | 2 | NA |
| 671 | 88.20 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 693 | 88.24 | wind | 9 | 43200 | > th | dose independent | rect. | 6 | 21 |
| 699 | 88.25 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 729 | 88.27 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 22 |
| 731 | 88.28 | wind | 9 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 739 | 88.28 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 20 |
| 744 | 88.29 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 788 | 88.33 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 823 | 88.36 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 862 | 88.39 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 871 | 88.40 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 897 | 88.42 | radiation | 40 | 270 | < th | dose independent | rect. | 24 | 19 |
| 912 | 88.43 | wind | 9 | 43200 | > th | dose dependent | no | NA | NA |
| 937 | 88.45 | temperature | 30 | 720 | > th | dose dependent | sin | 11 | NA |
| 982 | 88.47 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 22 |