Os10g0456000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0456000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.85 | 0.628 | 5.08 | 2.01 | 0.37 | -1.57 | 1.76 | -0.749 | 0.274 | 21.8 | 22.56 | 706 | -- | -- |
| 179.45 | 0.624 | 5.1 | 1.96 | 0.388 | -1.39 | 1.93 | -- | 0.266 | 21.8 | 22.77 | 704 | -- | -- |
| 190.18 | 0.642 | 5.08 | 2 | 0.408 | -1.58 | -- | -1.04 | 0.257 | 21.8 | 22.61 | 680 | -- | -- |
| 193.16 | 0.647 | 5.1 | 1.87 | 0.377 | -1.37 | -- | -- | 0.257 | 22.4 | 22.77 | 685 | -- | -- |
| 196.21 | 0.652 | 5.04 | 2.12 | -- | -1.94 | -- | -2.2 | 0.277 | -- | 22.55 | 693 | -- | -- |
| 203.43 | 0.669 | 5.05 | 2.29 | 0.526 | -- | 1.81 | -- | 0.47 | 21.9 | -- | -- | -- | -- |
| 215.93 | 0.688 | 5.05 | 2.22 | 0.516 | -- | -- | -- | 0.465 | 22.3 | -- | -- | -- | -- |
| 201.28 | 0.661 | 5.09 | 1.83 | -- | -1.54 | -- | -- | 0.227 | -- | 22.9 | 719 | -- | -- |
| 220.41 | 0.691 | 5.21 | -- | 0.496 | -1.87 | -- | -- | -0.207 | 22.2 | 21.35 | 47520 | -- | -- |
| 232.11 | 0.712 | 5.04 | 2.23 | -- | -- | -- | -- | 0.466 | -- | -- | -- | -- | -- |
| 345.95 | 0.87 | 5.11 | -- | 0.529 | -- | -- | -- | 0.218 | 22.6 | -- | -- | -- | -- |
| 235.31 | 0.714 | 5.19 | -- | -- | -1.88 | -- | -- | -0.215 | -- | 21.52 | 47520 | -- | -- |
| 363.16 | 0.889 | 5.1 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 3 | 170.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 5 | 170.50 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 6 | 170.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 9 | 170.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 11 | 171.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 13 | 171.12 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 18 | 171.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 23 | 171.79 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 40 | 172.21 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 11 |
| 41 | 172.25 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 44 | 172.28 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 13 |
| 58 | 172.51 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 7 |
| 71 | 172.77 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 89 | 173.07 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 108 | 173.30 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 118 | 173.40 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 160 | 173.91 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 17 |
| 182 | 174.30 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 19 |
| 410 | 177.45 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 435 | 177.71 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 501 | 178.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 530 | 178.58 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 6 |
| 546 | 178.79 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 14 |
| 584 | 179.09 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 22 |
| 772 | 180.60 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 776 | 180.62 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 785 | 180.68 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 822 | 180.88 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 825 | 180.90 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 878 | 181.23 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 23 |
| 950 | 181.77 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |