Os10g0455000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine-rich cell wall structural protein 2 precursor.
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Os10g0455000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine-rich cell wall structural protein 2 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.71 | 0.594 | 3.27 | 0.0157 | 0.201 | 3.16 | -1.04 | 22.7 | -0.0137 | 4.86 | 10 | 10 | 9 | 1 |
| 232.44 | 0.71 | 3.26 | -0.074 | 0.165 | 2.55 | -1.01 | -- | 7.63e-05 | 3.84 | 8.868 | 21 | 9.62 | 1.03 |
| 165.18 | 0.603 | 3.26 | 0.02 | 0.213 | 3.13 | -- | 22.6 | -0.00833 | 6.26 | 10 | 10 | 9 | 1 |
| 232.77 | 0.711 | 3.26 | -0.0588 | 0.233 | 2.71 | -- | -- | 0.00994 | 5.69 | 7.833 | 41 | 9.66 | 1.68 |
| 167.52 | 0.606 | 3.27 | 0.0263 | -- | 3.19 | -- | 22.5 | -0.00302 | -- | 9.902 | 10 | 9.09 | 1.23 |
| 257.78 | 0.753 | 3.26 | -0.0844 | 0.215 | -- | -0.942 | -- | -0.0309 | 4.82 | -- | -- | -- | -- |
| 258.61 | 0.753 | 3.26 | -0.0779 | 0.268 | -- | -- | -- | -0.0254 | 7.17 | -- | -- | -- | -- |
| 234.31 | 0.713 | 3.25 | -0.0447 | -- | 2.76 | -- | -- | 0.0135 | -- | 7.688 | 39 | 9.67 | 1.72 |
| 232.75 | 0.711 | 3.25 | -- | 0.209 | 2.67 | -- | -- | 0.0139 | 6.19 | 7.864 | 42 | 9.66 | 1.67 |
| 262.39 | 0.757 | 3.26 | -0.0729 | -- | -- | -- | -- | -0.0207 | -- | -- | -- | -- | -- |
| 258.77 | 0.752 | 3.26 | -- | 0.267 | -- | -- | -- | -0.0167 | 7.19 | -- | -- | -- | -- |
| 234.38 | 0.713 | 3.25 | -- | -- | 2.78 | -- | -- | 0.014 | -- | 7.68 | 39 | 9.66 | 1.72 |
| 262.53 | 0.756 | 3.26 | -- | -- | -- | -- | -- | -0.0126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.71 | radiation | 10.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 5 | 163.38 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 11 | 169.80 | wind | 1.0 | 30 | < th | dose independent | rect. | 9 | 1 |
| 12 | 170.92 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 52 | 213.96 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 86 | 224.37 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 92 | 225.20 | humidity | 80.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 110 | 225.22 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 6 |
| 114 | 225.23 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 152 | 226.82 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 162 | 226.82 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 175 | 227.24 | humidity | 80.0 | 90 | > th | dose independent | rect. | 8 | 3 |
| 189 | 228.47 | humidity | 80.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 209 | 229.37 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 210 | 229.37 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 212 | 229.48 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 213 | 229.48 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 222 | 230.08 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 239 | 230.58 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 4 |
| 324 | 234.73 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 359 | 235.66 | humidity | 80.0 | 270 | < th | dose independent | rect. | 2 | 1 |
| 360 | 235.66 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 408 | 236.87 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 416 | 237.03 | radiation | 20.0 | 30 | < th | dose independent | rect. | 9 | 18 |
| 418 | 237.08 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 427 | 237.34 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 437 | 237.53 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 439 | 237.55 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 448 | 237.70 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 460 | 237.82 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 463 | 237.84 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 464 | 237.84 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 467 | 237.84 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 471 | 237.84 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 480 | 237.84 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 481 | 237.84 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 501 | 237.84 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 504 | 237.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 520 | 237.96 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 521 | 237.97 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 528 | 238.08 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 538 | 238.16 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 540 | 238.16 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 541 | 238.16 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 545 | 238.16 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 547 | 238.16 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 552 | 238.16 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 553 | 238.16 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 554 | 238.16 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 559 | 238.16 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 586 | 238.73 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 601 | 239.04 | temperature | 20.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 613 | 239.24 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 620 | 239.35 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 639 | 239.59 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 656 | 239.81 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 672 | 240.01 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 706 | 240.33 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 6 | 4 |
| 707 | 240.34 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 775 | 240.80 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 776 | 240.80 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 829 | 241.12 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 831 | 241.13 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 2 |
| 901 | 241.65 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 4 |
| 908 | 241.69 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 951 | 242.08 | wind | 3.0 | 720 | > th | dose independent | rect. | 5 | 1 |
| 952 | 242.09 | wind | 3.0 | 720 | > th | dose dependent | rect. | 5 | 1 |