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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0454300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eggshell protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.011) R2 : 0.00346
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0292 (0.0232) R2dN8 : 0.00447 R2N8 : 0.00346
σ : 0.208
deviance : 19.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.62 0.197 3.08 0.129 0.111 0.169 0.0177 0.798 0.0132 8.89 90.95 5914 -- --
18.45 0.2 3.08 0.0725 0.13 0.206 -0.00747 -- -0.0128 8.35 101.8 4809 -- --
17.62 0.196 3.08 0.129 0.111 0.169 -- 0.799 0.0133 8.84 91 5914 -- --
18.45 0.2 3.08 0.0747 0.129 0.211 -- -- -0.0137 8.32 119.9 4792 -- --
18.32 0.199 3.08 0.127 -- 0.169 -- 0.788 0.0152 -- 90.48 5903 -- --
19.01 0.204 3.07 0.0621 0.109 -- 0.013 -- 0.0354 8.86 -- -- -- --
19.01 0.204 3.07 0.0625 0.109 -- -- -- 0.0353 8.82 -- -- -- --
19.14 0.204 3.08 0.0726 -- 0.21 -- -- -0.00853 -- 128.4 4366 -- --
18.59 0.201 3.08 -- 0.128 0.202 -- -- -0.0197 8.29 131.5 4789 -- --
19.69 0.207 3.07 0.0625 -- -- -- -- 0.0362 -- -- -- -- --
19.11 0.205 3.07 -- 0.109 -- -- -- 0.0284 8.78 -- -- -- --
19.28 0.204 3.08 -- -- 0.203 -- -- -0.0149 -- 150 4366 -- --
19.79 0.208 3.07 -- -- -- -- -- 0.0292 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.51 humidity 80 14400 < th dose dependent rect. 4 5
4 17.53 humidity 90 90 < th dose dependent rect. 2 5
8 17.57 humidity 80 14400 < th dose dependent rect. 24 10
13 17.58 humidity 70 14400 > th dose independent rect. 6 4
29 17.60 humidity 70 14400 < th dose independent rect. 6 4
40 17.61 humidity 70 14400 < th dose independent rect. 8 2
44 17.62 humidity 70 4320 > th dose independent rect. 10 1
45 17.63 humidity 70 4320 < th dose independent rect. 10 1
46 17.63 humidity 80 4320 > th dose dependent rect. 8 1
48 17.64 wind 3 14400 > th dose independent rect. 19 1
59 17.68 humidity 50 4320 > th dose dependent rect. 11 2
65 17.69 humidity 80 4320 < th dose independent rect. 7 6
73 17.70 humidity 60 14400 < th dose dependent rect. 12 1
76 17.71 wind 3 14400 < th dose independent rect. 19 1
79 17.72 humidity 90 90 < th dose independent rect. 2 5
80 17.72 wind 1 14400 < th dose dependent rect. 6 1
83 17.72 humidity 80 4320 < th dose dependent rect. 12 1
108 17.74 humidity 50 14400 > th dose dependent rect. 8 1
137 17.75 humidity 90 30 < th dose dependent rect. 3 2
147 17.76 humidity 70 4320 > th dose independent sin 2 NA
150 17.76 humidity 80 90 < th dose independent rect. 2 1
151 17.76 humidity 90 10 < th dose independent rect. 3 1
163 17.76 humidity 70 4320 < th dose independent rect. 8 9
277 17.77 humidity 80 14400 < th dose dependent sin 8 NA
353 17.78 humidity 90 4320 < th dose dependent rect. 6 10
357 17.79 humidity 70 4320 < th dose independent sin 1 NA
442 17.79 humidity 50 4320 > th dose dependent rect. 5 10
468 17.80 humidity 70 4320 > th dose independent rect. 16 23
553 17.81 humidity 70 4320 > th dose independent rect. 13 23
556 17.81 humidity 50 4320 > th dose dependent sin 3 NA
591 17.81 humidity 50 4320 > th dose dependent rect. 23 17
592 17.81 humidity 90 4320 < th dose dependent rect. 23 17
597 17.82 humidity 70 4320 > th dose independent no NA NA
598 17.82 wind 1 14400 < th dose independent rect. 4 3
690 17.82 humidity 70 4320 > th dose independent rect. 10 23
699 17.82 humidity 90 4320 < th dose dependent sin 1 NA
703 17.82 humidity 80 4320 < th dose dependent rect. 14 1
823 17.83 humidity 70 4320 < th dose independent rect. 16 23
874 17.84 humidity 70 4320 < th dose independent no NA NA
876 17.84 wind 1 14400 > th dose independent rect. 4 3
985 17.84 humidity 70 4320 < th dose independent rect. 10 23