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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0454200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eggshell protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.045) R2 : 0.0818
β1 : -0.111 (0.165) R2dD : 0.00112 R2D : -0.00122
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.11 (0.994) R2dE : 0.0983 R2E : -0.0541
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -23.5 (3.89) R2dD*E : 0.132 R2D*E : -0.0198
γ1 : -0.111 (0.0961) R2dN8 : 0.00356 R2N8 : 0.00103
σ : 0.842
deviance : 326.49
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.73
memory length : 113
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.9
open length of G : 0.984

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.89 0.847 3.09 -0.12 0.157 4.41 -0.303 -20.2 -0.102 23.7 90.59 95 4.98 1.03
344.41 0.871 3.07 -0.104 0.135 1.73 -0.512 -- -0.0705 1.92 95.29 26 5.19 1.55
325.24 0.84 3.09 -0.112 0.16 4.46 -- -20.3 -0.102 23.4 90.73 94 4.98 1.01
344.73 0.865 3.09 -0.0935 0.162 1.85 -- -- -0.116 23 95 24 4.99 1.73
326.49 0.842 3.09 -0.111 -- 5.11 -- -23.5 -0.111 -- 90.73 113 4.9 0.984
351.9 0.879 3.08 -0.118 0.164 -- -0.649 -- -0.0964 2.93 -- -- -- --
353.12 0.88 3.08 -0.104 0.167 -- -- -- -0.092 1.55 -- -- -- --
346.33 0.867 3.08 -0.0807 -- 1.83 -- -- -0.107 -- 95 24 4.96 1.75
344.88 0.865 3.08 -- 0.163 1.86 -- -- -0.109 22.9 95 24 4.96 1.75
354.83 0.88 3.08 -0.0968 -- -- -- -- -0.0884 -- -- -- -- --
353.4 0.879 3.08 -- 0.165 -- -- -- -0.0805 1.53 -- -- -- --
346.5 0.867 3.08 -- -- 1.79 -- -- -0.107 -- 95 24 4.93 1.78
355.08 0.88 3.07 -- -- -- -- -- -0.0776 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 325.17 humidity 90.0 90 < th dose dependent rect. 5 1
3 325.40 humidity 90.0 10 < th dose dependent rect. 5 1
4 325.75 humidity 80.0 10 < th dose independent rect. 23 7
7 325.80 humidity 80.0 10 < th dose dependent rect. 24 6
56 327.27 radiation 1.0 90 > th dose independent rect. 4 1
66 327.27 radiation 1.0 90 > th dose dependent rect. 4 1
81 330.65 temperature 20.0 90 < th dose dependent rect. 4 1
83 332.59 atmosphere 1005.0 10 > th dose dependent rect. 5 1
116 335.78 temperature 20.0 90 < th dose independent rect. 5 1
122 336.33 temperature 20.0 10 < th dose independent rect. 5 1
128 336.39 radiation 40.0 1440 > th dose dependent rect. 15 1
152 336.93 radiation 40.0 1440 > th dose independent rect. 15 1
169 336.98 radiation 1.0 10 < th dose dependent rect. 6 1
171 337.04 radiation 1.0 10 < th dose independent rect. 6 1
178 337.73 wind 9.0 10 < th dose independent rect. 3 23
181 337.87 temperature 25.0 30 > th dose dependent rect. 21 1
196 338.06 atmosphere 1005.0 10 < th dose independent rect. 4 2
198 338.14 atmosphere 1005.0 30 > th dose dependent rect. 2 4
201 338.37 atmosphere 1005.0 90 < th dose independent rect. 4 1
215 338.58 atmosphere 1010.0 10 < th dose dependent rect. 6 1
225 339.11 temperature 20.0 10 < th dose dependent rect. 20 2
228 339.15 temperature 20.0 90 < th dose independent rect. 20 1
229 339.17 temperature 20.0 90 < th dose dependent rect. 20 1
249 339.65 atmosphere 1005.0 30 > th dose independent rect. 4 2
259 339.84 wind 3.0 720 < th dose independent rect. 2 4
268 340.19 temperature 25.0 10 < th dose independent rect. 2 1
269 340.20 wind 1.0 30 > th dose independent rect. 2 1
270 340.26 radiation 10.0 90 < th dose dependent rect. 8 2
272 340.32 atmosphere 1000.0 10 > th dose independent rect. 2 1
279 340.43 temperature 30.0 10 < th dose dependent rect. 2 1
286 340.59 atmosphere 995.0 10 > th dose dependent rect. 2 1
288 340.62 wind 3.0 720 < th dose independent rect. 2 1
291 340.71 humidity 80.0 10 > th dose independent rect. 2 1
296 340.82 wind 5.0 10 < th dose independent rect. 2 1
299 340.83 temperature 10.0 10 > th dose independent rect. 2 1
302 340.83 humidity 50.0 10 > th dose independent rect. 2 1
306 340.83 atmosphere 1010.0 10 < th dose independent rect. 2 1
308 340.83 radiation 1.0 10 < th dose independent rect. 2 1
313 340.83 precipitation 0.1 10 < th dose independent rect. 2 1
314 340.83 temperature 10.0 10 > th dose independent rect. 3 23
315 340.83 radiation 1.0 10 < th dose dependent rect. 2 1
320 340.83 precipitation 0.1 10 < th dose dependent rect. 2 1
323 340.85 humidity 50.0 10 > th dose dependent rect. 2 1
363 341.07 wind 9.0 10 < th dose dependent rect. 2 1
366 341.08 radiation 10.0 10 < th dose dependent rect. 9 3
367 341.09 wind 1.0 90 < th dose dependent rect. 2 1
374 341.13 atmosphere 1015.0 30 < th dose dependent rect. 2 1
380 341.20 humidity 80.0 270 < th dose independent rect. 24 6
382 341.20 humidity 80.0 270 < th dose dependent rect. 24 6
384 341.23 wind 7.0 10 > th dose dependent rect. 9 1
394 341.26 temperature 10.0 30 > th dose dependent rect. 2 1
409 341.35 radiation 10.0 90 < th dose independent rect. 15 1
421 341.41 humidity 80.0 90 > th dose independent rect. 15 1
429 341.45 humidity 60.0 270 < th dose independent rect. 18 1
438 341.50 humidity 60.0 270 < th dose dependent rect. 18 1
442 341.53 humidity 80.0 10 > th dose independent rect. 15 1
478 341.71 wind 7.0 10 > th dose independent rect. 9 5
493 341.76 temperature 10.0 30 > th dose dependent rect. 15 11
499 341.87 wind 3.0 720 > th dose dependent rect. 5 1
501 341.89 wind 5.0 720 > th dose dependent rect. 2 5
517 342.02 radiation 10.0 10 < th dose independent rect. 14 16
534 342.09 atmosphere 1005.0 10 < th dose independent rect. 2 5
540 342.14 humidity 90.0 1440 > th dose dependent rect. 15 1
566 342.18 atmosphere 1005.0 270 < th dose independent rect. 2 1
569 342.20 wind 5.0 720 > th dose dependent rect. 1 7
574 342.22 humidity 70.0 10 > th dose dependent rect. 15 1
578 342.24 wind 5.0 720 > th dose independent rect. 4 1
581 342.25 atmosphere 1005.0 270 > th dose dependent rect. 2 1
618 342.46 radiation 10.0 10 < th dose dependent rect. 15 1
631 342.56 temperature 25.0 30 > th dose dependent rect. 5 2
646 342.66 temperature 20.0 720 < th dose independent rect. 3 2
671 342.83 wind 9.0 270 > th dose dependent rect. 19 16
675 342.85 wind 7.0 90 > th dose dependent rect. 22 13
676 342.86 wind 1.0 10 > th dose independent rect. 15 13
677 342.87 wind 7.0 10 > th dose independent rect. 11 3
682 342.89 temperature 25.0 270 > th dose dependent rect. 18 3
692 342.92 temperature 30.0 90 < th dose dependent rect. 19 11
693 342.93 wind 5.0 270 > th dose dependent rect. 2 1
694 342.93 wind 7.0 720 < th dose dependent rect. 2 4
696 342.94 wind 5.0 270 > th dose independent rect. 2 1
698 342.94 wind 5.0 720 > th dose independent rect. 2 5
717 343.04 wind 9.0 270 > th dose independent rect. 19 16
727 343.07 atmosphere 1010.0 1440 > th dose independent rect. 6 1
734 343.12 temperature 25.0 270 > th dose independent rect. 18 1
735 343.12 temperature 20.0 1440 > th dose independent rect. 3 2
736 343.12 humidity 80.0 4320 < th dose dependent rect. 1 1
740 343.14 wind 3.0 1440 > th dose independent rect. 2 1
743 343.16 wind 7.0 90 > th dose dependent rect. 9 2
747 343.17 humidity 90.0 10 < th dose independent rect. 4 11
748 343.17 wind 9.0 90 > th dose independent rect. 21 14
751 343.18 radiation 30.0 270 < th dose independent rect. 11 15
754 343.19 temperature 25.0 270 > th dose dependent rect. 18 1
756 343.20 temperature 25.0 90 > th dose independent rect. 5 1
794 343.28 precipitation 0.1 1440 > th dose independent rect. 15 1
797 343.28 precipitation 0.1 1440 > th dose dependent rect. 15 1
825 343.37 radiation 30.0 4320 < th dose independent rect. 16 12
836 343.39 wind 9.0 90 > th dose independent rect. 10 1
856 343.44 atmosphere 1005.0 30 > th dose independent rect. 21 1
866 343.44 wind 7.0 10 > th dose dependent sin 6 NA
903 343.55 atmosphere 995.0 43200 < th dose dependent rect. 14 1
934 343.61 humidity 50.0 1440 < th dose dependent rect. 16 1
947 343.63 humidity 50.0 1440 < th dose independent rect. 16 1
948 343.63 radiation 30.0 4320 < th dose independent rect. 16 1
951 343.63 wind 7.0 90 > th dose independent rect. 22 16
954 343.64 temperature 20.0 4320 > th dose independent rect. 1 1
955 343.64 temperature 15.0 30 > th dose independent rect. 15 11
976 343.66 radiation 30.0 4320 < th dose independent rect. 16 8
982 343.68 radiation 30.0 4320 < th dose independent rect. 16 3