Os10g0452500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine-rich protein precursor.
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Os10g0452500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine-rich protein precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.88 | 0.531 | 2.84 | -0.295 | 0.178 | -0.129 | -0.143 | 2.24 | 0.0168 | 7.76 | 9.649 | 4322 | -- | -- |
| 132.7 | 0.541 | 2.86 | -0.124 | 0.142 | -0.0967 | -0.244 | -- | 0.0637 | 5.49 | 9.649 | 4322 | -- | -- |
| 127.93 | 0.527 | 2.84 | -0.302 | 0.177 | -0.129 | -- | 2.23 | 0.0165 | 7.91 | 9.534 | 4328 | -- | -- |
| 132.76 | 0.537 | 2.86 | -0.122 | 0.187 | -0.0986 | -- | -- | 0.0517 | 8.38 | 20.02 | 4174 | -- | -- |
| 129.61 | 0.53 | 2.84 | -0.294 | -- | -0.134 | -- | 2.22 | 0.0211 | -- | 9.636 | 4341 | -- | -- |
| 132.91 | 0.54 | 2.85 | -0.123 | 0.177 | -- | -0.121 | -- | 0.0662 | 8 | -- | -- | -- | -- |
| 132.95 | 0.54 | 2.85 | -0.126 | 0.176 | -- | -- | -- | 0.0665 | 8.18 | -- | -- | -- | -- |
| 131.33 | 0.534 | 2.86 | -0.0478 | -- | 0.428 | -- | -- | 0.088 | -- | 0.4489 | 2563 | -- | -- |
| 133.13 | 0.537 | 2.86 | -- | 0.187 | -0.113 | -- | -- | 0.0615 | 8.44 | 20 | 4189 | -- | -- |
| 134.66 | 0.542 | 2.86 | -0.125 | -- | -- | -- | -- | 0.0685 | -- | -- | -- | -- | -- |
| 133.37 | 0.54 | 2.85 | -- | 0.175 | -- | -- | -- | 0.0805 | 8.23 | -- | -- | -- | -- |
| 131.31 | 0.534 | 2.86 | -- | -- | 0.449 | -- | -- | 0.116 | -- | 0.52 | 2622 | -- | -- |
| 135.07 | 0.542 | 2.86 | -- | -- | -- | -- | -- | 0.0823 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.43 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 2 | 116.46 | humidity | 80.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 19 | 117.99 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 24 | 120.32 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 25 | 120.37 | humidity | 80.0 | 720 | < th | dose independent | rect. | 2 | 1 |
| 29 | 120.37 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 62 | 120.71 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 6 |
| 100 | 122.28 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 108 | 122.66 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 118 | 122.85 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 119 | 122.87 | humidity | 80.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 132 | 123.13 | radiation | 1.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 171 | 123.41 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 187 | 123.61 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 192 | 123.61 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 225 | 123.89 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 6 | 3 |
| 238 | 123.91 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 12 |
| 255 | 124.02 | radiation | 40.0 | 30 | < th | dose independent | sin | 12 | NA |
| 258 | 124.07 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 303 | 124.45 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 399 | 124.57 | radiation | 30.0 | 30 | > th | dose dependent | sin | 12 | NA |
| 414 | 124.60 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 425 | 124.72 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 431 | 124.77 | humidity | 60.0 | 10 | < th | dose independent | rect. | 15 | 20 |
| 432 | 124.79 | humidity | 60.0 | 90 | < th | dose independent | rect. | 15 | 19 |
| 468 | 124.85 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 470 | 124.87 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 478 | 124.95 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 503 | 125.20 | radiation | 1.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 517 | 125.27 | humidity | 60.0 | 10 | < th | dose independent | sin | 11 | NA |
| 523 | 125.30 | humidity | 60.0 | 10 | > th | dose independent | sin | 11 | NA |
| 525 | 125.30 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 552 | 125.38 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 560 | 125.45 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 15 | 19 |
| 616 | 125.67 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 620 | 125.69 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 622 | 125.69 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 624 | 125.70 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 625 | 125.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 628 | 125.70 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 632 | 125.70 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 641 | 125.70 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 642 | 125.70 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 662 | 125.70 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 665 | 125.70 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 666 | 125.70 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 694 | 125.76 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 695 | 125.76 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 711 | 125.77 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 732 | 125.81 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 741 | 125.84 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 743 | 125.84 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 744 | 125.84 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 748 | 125.84 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 750 | 125.84 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 752 | 125.84 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 757 | 125.84 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 758 | 125.84 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 759 | 125.84 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 763 | 125.84 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 768 | 125.84 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 825 | 125.97 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 855 | 126.04 | radiation | 40.0 | 10 | < th | dose dependent | sin | 12 | NA |
| 880 | 126.08 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 894 | 126.10 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 958 | 126.22 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 986 | 126.28 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 987 | 126.28 | radiation | 30.0 | 10 | < th | dose independent | rect. | 7 | 19 |
| 995 | 126.31 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 5 | 1 |