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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0452300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eggshell protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0212) R2 : 0.000312
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0168 (0.0447) R2dN8 : 0.000402 R2N8 : 0.000312
σ : 0.4
deviance : 73.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.2 0.394 3.07 -0.335 0.145 1.73 0.182 -10.9 -0.00768 7.16 30.89 2 -- --
71.38 0.394 3.04 -0.0477 0.133 0.511 0.265 -- -0.00797 6.7 32.29 2 -- --
70.26 0.39 3.07 -0.323 0.146 1.77 -- -11.1 -0.00882 7.1 31.06 2 -- --
71.37 0.393 3.04 -0.0503 0.135 0.483 -- -- -0.0149 7.45 32.3 2 -- --
71.35 0.393 3.07 -0.318 -- 1.74 -- -11.3 -0.00802 -- 31.08 2 -- --
72.36 0.399 3.04 -0.0398 0.125 -- 0.13 -- -0.0221 8.22 -- -- -- --
72.41 0.398 3.04 -0.036 0.125 -- -- -- -0.0222 8.2 -- -- -- --
72.33 0.396 3.04 -0.0465 -- 0.467 -- -- -0.0135 -- 32.5 2 -- --
71.44 0.394 3.03 -- 0.134 0.479 -- -- -0.00937 7.5 32.35 2 -- --
73.27 0.4 3.04 -0.035 -- -- -- -- -0.0207 -- -- -- -- --
72.44 0.398 3.04 -- 0.124 -- -- -- -0.0182 8.22 -- -- -- --
72.39 0.396 3.04 -- -- 0.46 -- -- -0.00841 -- 32.5 2 -- --
73.3 0.4 3.04 -- -- -- -- -- -0.0168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.44 temperature 30.0 90 > th dose dependent rect. 10 1
18 67.42 temperature 30.0 10 > th dose dependent rect. 11 2
22 67.50 temperature 30.0 90 > th dose independent rect. 10 1
74 68.19 wind 7.0 90 > th dose dependent rect. 13 1
77 68.26 wind 7.0 30 > th dose independent rect. 13 1
82 68.41 wind 7.0 10 > th dose dependent rect. 13 1
84 68.42 temperature 30.0 90 > th dose dependent sin 8 NA
147 68.95 temperature 30.0 10 > th dose dependent sin 8 NA
241 69.52 atmosphere 1005.0 30 > th dose independent rect. 11 1
246 69.60 radiation 10.0 90 < th dose dependent rect. 10 3
262 69.81 humidity 50.0 720 > th dose independent rect. 3 8
263 69.81 humidity 50.0 10 > th dose independent rect. 2 12
267 69.90 atmosphere 995.0 14400 > th dose independent rect. 6 6
308 70.13 humidity 60.0 10 < th dose independent rect. 10 2
312 70.14 radiation 30.0 10 > th dose independent rect. 13 1
322 70.14 atmosphere 1010.0 30 < th dose independent rect. 2 12
360 70.17 wind 1.0 30 > th dose independent rect. 14 12
373 70.20 wind 3.0 90 < th dose independent rect. 2 1
406 70.22 wind 5.0 90 < th dose independent rect. 11 1
412 70.24 wind 5.0 720 < th dose independent rect. 2 1
414 70.24 precipitation 0.1 720 < th dose independent rect. 15 23
417 70.24 precipitation 0.1 720 < th dose dependent rect. 15 23
449 70.28 atmosphere 1000.0 90 > th dose dependent rect. 2 1
453 70.30 wind 5.0 90 < th dose dependent rect. 2 1
459 70.32 temperature 30.0 10 > th dose independent rect. 11 1
463 70.33 wind 9.0 30 < th dose independent rect. 14 12
466 70.35 humidity 60.0 10 < th dose independent sin 8 NA
477 70.37 wind 9.0 30 < th dose independent rect. 3 23
479 70.38 temperature 15.0 720 > th dose independent rect. 2 1
485 70.39 precipitation 0.1 720 < th dose independent rect. 11 16
488 70.39 precipitation 0.1 720 < th dose dependent rect. 11 16
505 70.41 temperature 10.0 1440 > th dose independent rect. 6 6
508 70.41 atmosphere 995.0 1440 > th dose independent rect. 6 6
509 70.41 temperature 10.0 720 > th dose independent rect. 3 8
510 70.41 atmosphere 995.0 720 > th dose independent rect. 3 8
511 70.41 temperature 10.0 720 > th dose independent rect. 11 16
512 70.41 atmosphere 1010.0 30 < th dose independent rect. 11 17
513 70.41 temperature 10.0 1440 > th dose independent rect. 12 18
522 70.42 temperature 30.0 1440 < th dose independent rect. 3 1
526 70.42 humidity 50.0 1440 > th dose independent rect. 3 1
535 70.42 atmosphere 995.0 1440 > th dose independent rect. 3 1
536 70.42 radiation 1.0 1440 < th dose independent rect. 3 1
556 70.42 temperature 10.0 1440 > th dose independent rect. 4 23
559 70.42 radiation 1.0 1440 < th dose dependent rect. 3 1
578 70.43 radiation 10.0 90 < th dose independent rect. 10 3
583 70.43 wind 9.0 720 < th dose dependent rect. 2 1
584 70.43 temperature 20.0 30 > th dose dependent rect. 2 1
586 70.43 radiation 20.0 10 > th dose dependent rect. 13 1
600 70.44 atmosphere 1000.0 30 > th dose dependent rect. 11 1
605 70.45 temperature 20.0 30 > th dose independent rect. 2 1
606 70.45 humidity 80.0 30 > th dose independent rect. 2 1
608 70.45 atmosphere 1005.0 30 > th dose independent rect. 2 1
610 70.45 temperature 20.0 30 > th dose independent rect. 11 7
611 70.45 precipitation 0.1 720 < th dose independent rect. 15 8
612 70.45 wind 9.0 30 < th dose independent rect. 2 12
613 70.45 atmosphere 1000.0 30 > th dose independent rect. 14 12
615 70.45 atmosphere 995.0 30 > th dose independent rect. 3 23
619 70.45 humidity 80.0 30 > th dose dependent rect. 2 1
623 70.45 precipitation 0.1 720 < th dose dependent rect. 15 8
627 70.46 temperature 10.0 30 > th dose independent rect. 2 1
629 70.46 temperature 30.0 30 < th dose independent rect. 2 1
630 70.46 humidity 50.0 30 > th dose independent rect. 2 1
635 70.46 atmosphere 995.0 30 > th dose independent rect. 2 1
636 70.46 atmosphere 1010.0 30 < th dose independent rect. 2 1
638 70.46 radiation 1.0 30 < th dose independent rect. 2 1
643 70.46 precipitation 0.1 30 < th dose independent rect. 2 1
644 70.46 radiation 40.0 720 < th dose independent rect. 15 8
645 70.46 temperature 10.0 30 > th dose independent rect. 3 23
646 70.46 humidity 50.0 30 > th dose dependent rect. 2 1
650 70.46 radiation 1.0 30 < th dose dependent rect. 2 1
655 70.46 precipitation 0.1 30 < th dose dependent rect. 2 1
662 70.47 temperature 20.0 1440 > th dose independent rect. 9 3
666 70.47 atmosphere 1015.0 30 < th dose dependent rect. 2 1
671 70.48 atmosphere 1005.0 30 > th dose independent rect. 11 5
672 70.48 atmosphere 1000.0 30 > th dose independent rect. 2 12
682 70.49 temperature 10.0 720 > th dose independent rect. 15 8
683 70.49 temperature 10.0 720 > th dose independent rect. 23 16
688 70.49 temperature 30.0 30 < th dose dependent rect. 2 1
692 70.50 precipitation 0.1 720 < th dose independent rect. 2 1
695 70.50 radiation 40.0 30 < th dose independent rect. 14 12
702 70.50 precipitation 0.1 720 < th dose dependent rect. 2 1
709 70.51 humidity 90.0 30 < th dose independent rect. 11 7
710 70.51 wind 9.0 720 < th dose independent rect. 3 8
714 70.51 wind 7.0 10 < th dose independent rect. 12 23
718 70.52 wind 1.0 30 > th dose independent rect. 2 1
732 70.53 wind 9.0 720 < th dose independent rect. 14 1
740 70.53 atmosphere 995.0 720 > th dose independent rect. 14 1
747 70.53 precipitation 0.1 30 < th dose independent rect. 2 12
758 70.53 precipitation 0.1 30 < th dose dependent rect. 2 12
762 70.54 temperature 10.0 1440 > th dose independent rect. 3 12
765 70.54 temperature 10.0 1440 > th dose independent rect. 15 12
826 70.55 precipitation 0.1 4320 < th dose independent rect. 12 1
827 70.55 wind 1.0 30 > th dose independent rect. 18 17
836 70.55 precipitation 0.1 4320 < th dose dependent rect. 12 1
840 70.56 temperature 10.0 720 > th dose independent rect. 14 1
842 70.56 atmosphere 1015.0 720 < th dose independent rect. 14 1
843 70.56 radiation 10.0 90 < th dose independent rect. 10 1
845 70.56 temperature 10.0 30 > th dose independent rect. 2 12
847 70.56 temperature 10.0 30 > th dose independent rect. 14 12
852 70.56 precipitation 0.1 30 < th dose independent rect. 14 12
853 70.56 wind 1.0 30 > th dose independent rect. 14 21
855 70.56 temperature 10.0 720 > th dose independent rect. 15 23
856 70.56 precipitation 0.1 30 < th dose independent rect. 3 23
871 70.56 precipitation 0.1 30 < th dose dependent rect. 14 12
879 70.56 precipitation 0.1 30 < th dose dependent rect. 3 23
888 70.58 humidity 60.0 30 > th dose independent sin 8 NA
925 70.59 wind 1.0 30 > th dose independent rect. 14 23
927 70.59 atmosphere 995.0 720 > th dose independent rect. 3 23
931 70.60 precipitation 0.1 720 < th dose independent rect. 14 1
936 70.60 precipitation 0.1 720 < th dose dependent rect. 14 1
943 70.61 temperature 30.0 30 < th dose independent rect. 3 23
944 70.61 wind 7.0 90 < th dose dependent rect. 11 1
962 70.62 wind 1.0 10 > th dose independent rect. 24 11
977 70.63 atmosphere 1005.0 30 > th dose independent rect. 13 1
982 70.63 wind 3.0 10 < th dose dependent rect. 11 1
995 70.65 wind 1.0 720 > th dose independent rect. 14 1
996 70.65 temperature 20.0 1440 < th dose independent rect. 9 1
999 70.65 humidity 50.0 30 > th dose independent rect. 14 12