FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0451700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glycine-rich cell wall structural protein 2 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0212) R2 : 0.00602
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0743 (0.0447) R2dN8 : 0.00778 R2N8 : 0.00602
σ : 0.4
deviance : 73.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.24 0.394 3.02 0.000588 0.207 0.216 -0.878 -0.967 0.0903 10.1 0.03975 95 -- --
71.48 0.397 3.03 -0.0755 0.12 0.0421 -0.538 -- 0.0635 4.62 0.005588 93 -- --
71.13 0.393 3.03 -0.0115 0.206 0.221 -- -0.359 0.0899 10.3 0.0001428 99 -- --
71.83 0.395 3.03 -0.0608 0.181 0.196 -- -- 0.0752 10.3 0.009979 96 -- --
71.92 0.395 3.03 -0.0741 -- 0.0926 -- -0.369 0.0649 -- 14.85 254 -- --
71.61 0.397 3.03 -0.0819 0.132 -- -0.524 -- 0.0602 3.99 -- -- -- --
72.4 0.398 3.03 -0.0753 0.129 -- -- -- 0.0631 4.15 -- -- -- --
72.36 0.396 3.03 -0.0693 -- 0.144 -- -- 0.0756 -- 7.388 564 -- --
71.91 0.395 3.03 -- 0.188 0.203 -- -- 0.0841 10.4 0.0001926 95 -- --
73.3 0.4 3.03 -0.0701 -- -- -- -- 0.0666 -- -- -- -- --
72.55 0.398 3.03 -- 0.128 -- -- -- 0.0715 4.16 -- -- -- --
72.5 0.397 3.03 -- -- 0.141 -- -- 0.0789 -- 6.721 564 -- --
73.43 0.4 3.03 -- -- -- -- -- 0.0743 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.00 humidity 90.0 90 < th dose independent rect. 2 1
2 60.16 atmosphere 1005.0 30 > th dose independent rect. 2 2
5 61.12 atmosphere 1005.0 90 > th dose dependent rect. 2 2
8 61.74 temperature 20.0 10 < th dose independent rect. 4 1
22 63.05 wind 3.0 30 < th dose independent rect. 2 2
29 63.91 wind 1.0 90 > th dose independent rect. 2 1
35 64.13 temperature 20.0 90 > th dose independent rect. 2 2
41 64.39 temperature 30.0 90 < th dose dependent rect. 2 1
47 64.55 precipitation 0.1 30 < th dose independent rect. 2 2
48 64.55 precipitation 0.1 30 < th dose dependent rect. 2 2
49 64.58 wind 9.0 30 < th dose dependent rect. 2 2
50 64.60 atmosphere 1000.0 30 > th dose independent rect. 4 22
57 64.68 temperature 10.0 30 > th dose independent rect. 2 2
59 64.68 temperature 30.0 30 < th dose independent rect. 2 2
60 64.68 humidity 50.0 30 > th dose independent rect. 2 2
63 64.68 atmosphere 995.0 30 > th dose independent rect. 2 2
64 64.68 atmosphere 1010.0 30 < th dose independent rect. 2 2
66 64.68 radiation 1.0 30 < th dose independent rect. 2 2
71 64.68 temperature 10.0 30 > th dose independent rect. 4 22
73 64.68 radiation 1.0 30 < th dose dependent rect. 2 2
79 64.70 precipitation 0.1 30 < th dose independent rect. 4 22
80 64.70 precipitation 0.1 30 < th dose dependent rect. 4 22
112 64.78 temperature 30.0 10 < th dose dependent rect. 2 2
119 64.88 wind 9.0 1440 < th dose independent rect. 3 2
120 64.88 temperature 10.0 1440 > th dose independent rect. 3 2
123 64.88 temperature 30.0 1440 < th dose independent rect. 3 2
127 64.88 humidity 50.0 1440 > th dose independent rect. 3 2
136 64.88 atmosphere 995.0 1440 > th dose independent rect. 3 2
137 64.88 radiation 20.0 1440 < th dose independent rect. 3 2
149 64.88 temperature 10.0 1440 > th dose independent rect. 5 22
153 64.92 wind 9.0 30 < th dose independent rect. 4 22
184 65.05 humidity 90.0 270 < th dose independent rect. 24 3
192 65.15 humidity 50.0 30 > th dose independent rect. 4 22
196 65.22 temperature 10.0 30 > th dose dependent rect. 2 2
207 65.37 humidity 50.0 10 > th dose dependent rect. 2 2
208 65.38 wind 3.0 270 > th dose independent rect. 24 1
264 65.88 temperature 30.0 30 < th dose independent rect. 4 22
267 65.91 humidity 90.0 270 < th dose dependent rect. 24 1
389 66.48 humidity 80.0 720 > th dose independent rect. 23 1
390 66.49 wind 1.0 30 > th dose independent rect. 4 22
435 66.71 atmosphere 1015.0 90 < th dose dependent rect. 2 1
463 66.82 atmosphere 1015.0 30 < th dose independent rect. 4 22
471 66.88 wind 1.0 90 > th dose dependent rect. 2 1
483 66.94 radiation 1.0 10 < th dose dependent rect. 2 6
551 67.12 wind 1.0 270 > th dose dependent rect. 24 1
553 67.12 radiation 20.0 10 < th dose dependent rect. 16 10
574 67.22 precipitation 0.1 10 < th dose independent rect. 2 14
576 67.22 precipitation 0.1 10 < th dose dependent rect. 2 14
579 67.24 humidity 80.0 720 > th dose independent rect. 21 4
581 67.24 humidity 50.0 10 > th dose independent rect. 16 10
603 67.25 atmosphere 1015.0 1440 < th dose independent rect. 4 1
625 67.26 atmosphere 1000.0 10 > th dose independent rect. 2 14
629 67.27 temperature 10.0 10 > th dose independent rect. 16 10
630 67.27 atmosphere 995.0 10 > th dose independent rect. 16 10
632 67.27 radiation 40.0 10 < th dose independent rect. 16 10
633 67.27 temperature 10.0 10 > th dose independent rect. 2 14
636 67.27 atmosphere 1015.0 10 < th dose independent rect. 2 14
639 67.28 radiation 1.0 10 < th dose independent rect. 2 6
643 67.28 wind 9.0 10 < th dose independent rect. 16 10
644 67.28 radiation 10.0 10 < th dose independent rect. 16 10
651 67.29 radiation 40.0 10 < th dose dependent rect. 14 12
661 67.32 precipitation 0.1 10 < th dose independent rect. 16 10
666 67.32 precipitation 0.1 10 < th dose dependent rect. 16 10
685 67.34 atmosphere 1015.0 10 < th dose dependent rect. 2 2
696 67.36 radiation 10.0 10 < th dose independent rect. 14 12
708 67.40 temperature 30.0 10 < th dose independent rect. 16 10
725 67.41 radiation 20.0 10 < th dose dependent rect. 14 12
730 67.42 wind 9.0 10 < th dose independent rect. 2 14
744 67.46 temperature 10.0 1440 > th dose independent rect. 17 10
747 67.46 radiation 30.0 1440 < th dose independent rect. 17 10
753 67.46 temperature 10.0 1440 > th dose independent rect. 3 14
831 67.61 radiation 10.0 10 < th dose dependent rect. 5 21
896 67.81 humidity 50.0 30 > th dose independent rect. 2 14
919 67.88 humidity 80.0 720 > th dose independent rect. 22 9
927 67.91 temperature 30.0 30 < th dose independent rect. 2 14