Os10g0450900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine-rich cell wall structural protein 2 precursor.
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Os10g0450900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine-rich cell wall structural protein 2 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.67 | 0.531 | 13.5 | 1.9 | 0.832 | 1.66 | -0.0213 | 2.17 | 0.818 | 3.06 | 5.994 | 1897 | -- | -- |
| 129.14 | 0.529 | 13.5 | 1.87 | 0.873 | 1.36 | 0.0367 | -- | 0.827 | 2.98 | 5.999 | 1842 | -- | -- |
| 127.67 | 0.526 | 13.5 | 1.9 | 0.832 | 1.66 | -- | 2.17 | 0.818 | 3.06 | 5.993 | 1896 | -- | -- |
| 128.9 | 0.529 | 13.5 | 1.84 | 0.834 | 1.28 | -- | -- | 0.841 | 3 | 6 | 1898 | -- | -- |
| 162.61 | 0.594 | 13.5 | 2.02 | -- | 1.74 | -- | 2.09 | 0.875 | -- | 5.81 | 2418 | -- | -- |
| 146.51 | 0.567 | 13.5 | 1.54 | 0.86 | -- | -0.0749 | -- | 0.767 | 2.56 | -- | -- | -- | -- |
| 146.53 | 0.567 | 13.5 | 1.54 | 0.859 | -- | -- | -- | 0.768 | 2.55 | -- | -- | -- | -- |
| 162.04 | 0.593 | 13.5 | 1.92 | -- | 1.57 | -- | -- | 0.79 | -- | 4.77 | 2408 | -- | -- |
| 199 | 0.657 | 13.6 | -- | 0.828 | 0.469 | -- | -- | 0.663 | 2.54 | 10.61 | 3900 | -- | -- |
| 189.83 | 0.644 | 13.5 | 1.58 | -- | -- | -- | -- | 0.789 | -- | -- | -- | -- | -- |
| 209.41 | 0.677 | 13.6 | -- | 0.889 | -- | -- | -- | 0.596 | 2.58 | -- | -- | -- | -- |
| 242.27 | 0.725 | 13.6 | -- | -- | 0.741 | -- | -- | 0.676 | -- | 10.7 | 3900 | -- | -- |
| 255.77 | 0.746 | 13.6 | -- | -- | -- | -- | -- | 0.614 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.19 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 7 |
| 16 | 120.55 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 25 | 120.78 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 30 | 120.99 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 139 | 124.16 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 181 | 124.78 | wind | 9 | 4320 | > th | dose dependent | sin | 11 | NA |
| 307 | 126.63 | wind | 9 | 4320 | > th | dose independent | sin | 11 | NA |
| 326 | 126.77 | wind | 9 | 4320 | < th | dose independent | sin | 11 | NA |
| 373 | 127.27 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 432 | 127.98 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 443 | 128.13 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 475 | 128.51 | wind | 5 | 720 | < th | dose independent | rect. | 21 | 21 |
| 495 | 128.69 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 500 | 128.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 525 | 128.95 | wind | 7 | 1440 | > th | dose independent | sin | 9 | NA |
| 527 | 128.96 | wind | 5 | 1440 | > th | dose dependent | rect. | 20 | 19 |
| 534 | 128.99 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 537 | 129.02 | wind | 7 | 1440 | < th | dose independent | sin | 9 | NA |
| 567 | 129.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 580 | 129.24 | wind | 5 | 1440 | > th | dose dependent | sin | 8 | NA |
| 590 | 129.28 | wind | 5 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 596 | 129.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 602 | 129.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 620 | 129.36 | wind | 5 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 700 | 129.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 704 | 129.65 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 719 | 129.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 731 | 129.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 736 | 129.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 778 | 129.87 | wind | 5 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 790 | 129.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 795 | 129.91 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 798 | 129.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 828 | 129.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 843 | 130.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 851 | 130.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 854 | 130.04 | wind | 5 | 1440 | > th | dose dependent | no | NA | NA |
| 855 | 130.04 | wind | 5 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 864 | 130.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 875 | 130.09 | wind | 5 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 886 | 130.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 894 | 130.12 | wind | 5 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 899 | 130.13 | wind | 5 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 902 | 130.14 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 926 | 130.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 930 | 130.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 936 | 130.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |