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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0450000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF247, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.49 (0.0425) R2 : 0.331
β1 : -1.29 (0.16) R2dD : 0.104 R2D : 0.0186
β2 : 1.04 (0.109) R2dC : 0.133 R2C : 0.117
β3 : 1.13 (0.119) R2dE : 0.139 R2E : 0.0841
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.417 (0.0906) R2dN8 : 0.0417 R2N8 : 0.015
σ : 0.793
deviance : 290.04
__
_____
C
peak time of C : 7.28
E
wheather : temperature
threshold : 27.27
memory length : 1257
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
277.27 0.782 5.67 -2.79 1.07 1.83 1.44 -6.56 -0.678 7.16 27.25 1246 -- --
284.27 0.785 5.48 -1.28 1.04 1.09 1.55 -- -0.374 7.05 27.87 1246 -- --
282.68 0.783 5.67 -2.76 1.07 1.84 -- -6.55 -0.681 7.33 27.24 1246 -- --
290.04 0.793 5.49 -1.29 1.04 1.13 -- -- -0.417 7.28 27.27 1257 -- --
341.4 0.861 5.7 -2.73 -- 1.78 -- -6.14 -0.686 -- 27.06 1305 -- --
337.47 0.861 5.5 -0.971 1.05 -- 1.73 -- -0.429 6.48 -- -- -- --
344.81 0.87 5.5 -0.946 1.06 -- -- -- -0.434 6.62 -- -- -- --
345.91 0.866 5.53 -1.29 -- 1.12 -- -- -0.427 -- 26.9 1310 -- --
328.76 0.844 5.41 -- 0.957 0.887 -- -- -0.155 7.11 31.44 1169 -- --
403.37 0.938 5.52 -0.921 -- -- -- -- -0.413 -- -- -- -- --
368.4 0.898 5.48 -- 1.05 -- -- -- -0.329 6.67 -- -- -- --
383.96 0.913 5.46 -- -- 0.897 -- -- -0.125 -- 32.1 1252 -- --
425.74 0.963 5.5 -- -- -- -- -- -0.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 263.56 humidity 70 720 < th dose independent rect. 18 2
14 266.00 humidity 70 720 > th dose independent rect. 19 8
15 267.25 temperature 30 720 > th dose dependent rect. 18 1
60 269.38 temperature 25 720 > th dose dependent rect. 21 2
61 269.61 humidity 70 720 < th dose dependent rect. 18 2
115 272.51 wind 1 90 < th dose independent rect. 4 1
137 273.24 temperature 30 720 > th dose independent rect. 18 1
170 274.29 wind 1 90 < th dose dependent rect. 4 1
179 274.74 humidity 50 1440 < th dose independent rect. 16 1
183 274.99 humidity 50 1440 < th dose dependent rect. 16 1
195 275.72 humidity 70 720 > th dose independent rect. 17 15
196 275.73 humidity 70 1440 > th dose independent rect. 18 2
199 275.78 humidity 70 1440 > th dose independent rect. 18 13
201 275.81 humidity 70 1440 > th dose independent rect. 18 4
299 277.89 humidity 50 1440 > th dose independent rect. 16 1
317 278.50 temperature 30 1440 < th dose independent rect. 18 2
326 279.13 temperature 30 1440 < th dose independent rect. 18 6
344 279.54 temperature 30 1440 < th dose independent rect. 18 8
345 279.68 temperature 30 1440 < th dose independent rect. 18 10
356 280.07 temperature 30 1440 < th dose independent rect. 18 14
399 280.61 humidity 70 720 < th dose independent sin 12 NA
405 280.70 humidity 70 720 > th dose independent sin 12 NA
410 281.12 temperature 25 720 > th dose dependent sin 12 NA
526 282.21 humidity 70 1440 < th dose dependent sin 12 NA
547 282.31 radiation 1 720 > th dose independent rect. 18 11
571 282.71 radiation 1 720 > th dose independent rect. 18 1
636 283.27 radiation 1 720 > th dose dependent rect. 18 11
640 283.35 radiation 1 720 > th dose dependent rect. 18 1
652 283.41 temperature 30 1440 < th dose independent sin 12 NA
684 283.63 temperature 30 1440 > th dose independent sin 13 NA
779 284.22 radiation 30 1440 > th dose independent rect. 16 16
800 284.28 humidity 90 90 > th dose dependent rect. 4 1
953 285.17 humidity 90 90 > th dose independent rect. 4 1
993 285.49 radiation 1 1440 < th dose independent rect. 18 10