Os10g0447100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 5) (Ubiquitin carrier protein 5).
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Os10g0447100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 5) (Ubiquitin carrier protein 5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.61 | 0.256 | 13.3 | -0.385 | 0.654 | 0.693 | -0.12 | 0.238 | 0.0908 | 23.2 | 44.53 | 75 | -- | -- |
| 29.67 | 0.254 | 13.3 | -0.39 | 0.647 | 0.685 | 0.0254 | -- | 0.0895 | 23.3 | 42.69 | 72 | -- | -- |
| 29.63 | 0.254 | 13.3 | -0.381 | 0.652 | 0.682 | -- | 0.112 | 0.0919 | 23.3 | 43.22 | 72 | -- | -- |
| 29.67 | 0.254 | 13.3 | -0.385 | 0.645 | 0.682 | -- | -- | 0.0943 | 23.3 | 42.36 | 74 | -- | -- |
| 33.97 | 0.271 | 13.3 | -0.38 | -- | 1 | -- | 0.0431 | 0.095 | -- | 20.35 | 18 | -- | -- |
| 36.62 | 0.284 | 13.3 | -0.4 | 1.11 | -- | 0.0878 | -- | 0.0517 | 23.8 | -- | -- | -- | -- |
| 36.65 | 0.284 | 13.3 | -0.403 | 1.11 | -- | -- | -- | 0.0514 | 23.8 | -- | -- | -- | -- |
| 33.87 | 0.271 | 13.3 | -0.37 | -- | 0.989 | -- | -- | 0.0939 | -- | 20.91 | 17 | -- | -- |
| 33.47 | 0.269 | 13.3 | -- | 0.604 | 0.677 | -- | -- | 0.137 | 23.1 | 36.29 | 76 | -- | -- |
| 114.56 | 0.5 | 13.3 | -0.37 | -- | -- | -- | -- | 0.0657 | -- | -- | -- | -- | -- |
| 40.94 | 0.299 | 13.3 | -- | 1.11 | -- | -- | -- | 0.0963 | 23.8 | -- | -- | -- | -- |
| 37.46 | 0.285 | 13.3 | -- | -- | 0.999 | -- | -- | 0.135 | -- | 21.95 | 17 | -- | -- |
| 118.17 | 0.507 | 13.3 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.97 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 2 | 28.34 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 22 |
| 4 | 28.45 | radiation | 10 | 30 | < th | dose independent | sin | 23 | NA |
| 6 | 28.54 | radiation | 20 | 10 | < th | dose dependent | sin | 22 | NA |
| 7 | 28.57 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 13 |
| 9 | 28.62 | radiation | 20 | 90 | < th | dose independent | rect. | 2 | 17 |
| 10 | 28.65 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 14 | 28.71 | radiation | 40 | 90 | < th | dose dependent | rect. | 2 | 17 |
| 36 | 28.93 | radiation | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 88 | 29.34 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 8 |
| 115 | 29.41 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 127 | 29.47 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 8 |
| 203 | 29.65 | radiation | 1 | 90 | > th | dose dependent | sin | 1 | NA |
| 235 | 29.72 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 8 |
| 274 | 29.78 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 7 |
| 293 | 29.82 | radiation | 10 | 90 | > th | dose independent | sin | 0 | NA |
| 307 | 29.84 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 338 | 29.92 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 354 | 29.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 17 |
| 384 | 29.98 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 22 |
| 414 | 30.00 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 429 | 30.01 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 548 | 30.08 | radiation | 20 | 10 | < th | dose independent | rect. | 2 | 21 |
| 572 | 30.10 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 14 |
| 609 | 30.14 | radiation | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 616 | 30.15 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 664 | 30.20 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 6 |
| 712 | 30.22 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 725 | 30.23 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |
| 729 | 30.23 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 743 | 30.25 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 21 |
| 793 | 30.28 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 826 | 30.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 862 | 30.32 | radiation | 40 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 910 | 30.35 | radiation | 10 | 10 | < th | dose independent | no | NA | NA |
| 941 | 30.37 | radiation | 10 | 10 | < th | dose independent | rect. | 15 | 23 |