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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0443000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Soluble quinoprotein glucose dehydrogenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4 (0.0441) R2 : 0.172
β1 : 0.56 (0.17) R2dD : 0.0221 R2D : 0.0398
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.119 (0.163) R2dE : 0.00121 R2E : -0.000885
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5 (0.715) R2dD*E : 0.105 R2D*E : 0.137
γ1 : 0.272 (0.0953) R2dN8 : 0.0187 R2N8 : 0.00872
σ : 0.823
deviance : 312.35
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 32.35
memory length : 4480
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.22 0.815 4.01 0.497 0.304 -0.0752 1.39 -5.33 0.241 1.31 30.47 4326 -- --
332.36 0.849 4.02 1.09 0.288 -0.335 1.26 -- 0.324 1.2 31.96 1557 -- --
306.88 0.816 4.01 0.517 0.363 -0.0934 -- -5.28 0.257 1.6 32.35 4493 -- --
336.98 0.855 4.02 1.01 0.273 -0.342 -- -- 0.338 1.08 50.49 1449 -- --
312.35 0.823 4 0.56 -- -0.119 -- -5 0.272 -- 32.35 4480 -- --
338.49 0.863 4 0.979 0.273 -- 1.3 -- 0.318 1.21 -- -- -- --
345.41 0.87 4 0.933 0.275 -- -- -- 0.31 1.61 -- -- -- --
341.76 0.861 4.01 0.992 -- -0.345 -- -- 0.353 -- 50.52 1456 -- --
361.97 0.886 4.01 -- 0.297 -0.427 -- -- 0.256 0.702 49.95 1474 -- --
350.02 0.874 4 0.944 -- -- -- -- 0.316 -- -- -- -- --
368.36 0.898 4.02 -- 0.291 -- -- -- 0.206 1.72 -- -- -- --
366.34 0.891 3.99 -- -- -0.539 -- -- 0.298 -- 49.78 1920 -- --
373.53 0.902 4.02 -- -- -- -- -- 0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 297.88 humidity 80 43200 < th dose dependent rect. 6 2
3 299.44 radiation 30 4320 > th dose independent rect. 15 20
7 300.13 radiation 30 4320 < th dose independent rect. 9 2
21 301.73 radiation 40 14400 < th dose independent rect. 16 21
22 301.74 radiation 40 14400 < th dose independent rect. 4 9
40 301.87 radiation 30 4320 > th dose independent rect. 9 2
90 302.39 radiation 20 14400 < th dose dependent rect. 15 2
91 302.40 radiation 20 14400 < th dose dependent rect. 13 16
93 302.43 radiation 20 14400 < th dose dependent rect. 13 6
103 302.48 radiation 30 14400 > th dose dependent rect. 10 2
104 302.49 radiation 30 4320 > th dose independent sin 6 NA
109 302.50 radiation 20 14400 < th dose dependent rect. 15 14
111 302.51 radiation 20 14400 < th dose dependent rect. 15 5
209 302.64 radiation 30 14400 > th dose dependent rect. 15 21
211 302.65 radiation 30 14400 > th dose dependent rect. 8 4
213 302.66 radiation 40 14400 < th dose independent rect. 10 7
223 302.66 radiation 40 14400 < th dose independent rect. 10 19
240 302.70 radiation 40 14400 < th dose independent sin 6 NA
293 302.77 radiation 30 4320 > th dose independent no NA NA
297 302.77 radiation 30 4320 > th dose independent rect. 7 10
490 302.83 radiation 1 14400 > th dose dependent rect. 15 2
530 302.87 radiation 40 14400 < th dose dependent rect. 18 6
670 303.10 radiation 20 14400 < th dose dependent sin 15 NA
672 303.11 radiation 30 14400 > th dose independent sin 10 NA
676 303.13 radiation 40 14400 < th dose independent rect. 4 13
690 303.13 radiation 40 14400 < th dose independent rect. 1 20
701 303.14 radiation 40 14400 < th dose independent no NA NA
820 303.16 radiation 1 14400 > th dose dependent rect. 15 4
912 303.38 radiation 10 14400 > th dose independent rect. 15 15
926 303.40 radiation 10 14400 > th dose independent rect. 15 3
939 303.40 radiation 30 14400 > th dose dependent sin 8 NA