Os10g0442800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein serine/threonine kinase (Protein kinase).
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Os10g0442800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein serine/threonine kinase (Protein kinase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.8 | 0.281 | 11.6 | -0.481 | 1.25 | 0.306 | -0.117 | -2.88 | 0.0225 | 1.83 | 7.594 | 1709 | -- | -- |
| 42.27 | 0.303 | 11.5 | 0.0792 | 1.23 | 0.315 | -0.105 | -- | 0.15 | 1.8 | -1.371 | 8454 | -- | -- |
| 35.85 | 0.279 | 11.6 | -0.477 | 1.25 | 0.305 | -- | -2.88 | 0.0236 | 1.82 | 7.602 | 1707 | -- | -- |
| 42.31 | 0.303 | 11.5 | 0.0833 | 1.23 | 0.313 | -- | -- | 0.151 | 1.79 | -0.2124 | 8467 | -- | -- |
| 106.35 | 0.483 | 11.4 | 0.211 | -- | -1.31 | -- | -2.43 | 0.36 | -- | 7.602 | 1707 | -- | -- |
| 43.89 | 0.311 | 11.5 | 0.247 | 1.24 | -- | -0.0921 | -- | 0.243 | 1.8 | -- | -- | -- | -- |
| 43.92 | 0.31 | 11.5 | 0.249 | 1.24 | -- | -- | -- | 0.244 | 1.8 | -- | -- | -- | -- |
| 92.31 | 0.447 | 11.4 | 0.486 | -- | -1.35 | -- | -- | 0.396 | -- | 24.6 | 5 | -- | -- |
| 42.44 | 0.303 | 11.5 | -- | 1.23 | 0.362 | -- | -- | 0.13 | 1.79 | -3.762 | 8497 | -- | -- |
| 137.78 | 0.548 | 11.4 | 0.3 | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
| 45.56 | 0.316 | 11.5 | -- | 1.25 | -- | -- | -- | 0.216 | 1.8 | -- | -- | -- | -- |
| 98.37 | 0.462 | 11.4 | -- | -- | -1.29 | -- | -- | 0.334 | -- | 24.6 | 2 | -- | -- |
| 140.16 | 0.553 | 11.5 | -- | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 2 | 33.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 3 | 33.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 10 | 33.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 27 | 33.79 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 49 | 33.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 52 | 33.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 88 | 34.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 92 | 34.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 154 | 34.32 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 229 | 34.51 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 230 | 34.51 | radiation | 10 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 236 | 34.53 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 260 | 34.58 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 274 | 34.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 295 | 34.67 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 355 | 34.89 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 371 | 34.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 376 | 34.95 | humidity | 90 | 14400 | < th | dose independent | sin | 9 | NA |
| 405 | 35.02 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 415 | 35.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 428 | 35.09 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 429 | 35.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 431 | 35.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 437 | 35.11 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 461 | 35.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 500 | 35.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 508 | 35.24 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 569 | 35.39 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 575 | 35.42 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 580 | 35.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 584 | 35.44 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 597 | 35.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 648 | 35.57 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 653 | 35.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 731 | 35.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 755 | 35.75 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 769 | 35.78 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 778 | 35.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 779 | 35.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 783 | 35.79 | wind | 5 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 790 | 35.80 | radiation | 40 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 794 | 35.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 799 | 35.82 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 805 | 35.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 808 | 35.83 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 826 | 35.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 843 | 35.89 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 22 |
| 854 | 35.90 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 20 |
| 859 | 35.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 894 | 35.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 907 | 35.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 10 |
| 908 | 35.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 932 | 35.97 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 933 | 35.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 939 | 35.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 943 | 35.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 953 | 35.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 972 | 35.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 974 | 35.99 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 987 | 35.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |